Gene detail information of Glyur002213s00037359.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26310.1 | 1.00E-31 | K-box region and MADS-box transcription factor family protein |
| NR | NP_001241059.1 | 3.31E-95 | agamous-like MADS-box protein AGL3-like [Glycine max] |
| Swissprot | tr|Q9SBH1|CAL_ARATH | 2.00E-37 | Transcription factor CAULIFLOWER |
| trEMBL | tr|G3E7M7|G3E7M7_SOYBN | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G11110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02213 | 21581 | 35466 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002213s00037359.1 | PF00319.13 | SRF-TF | 9 | 59 | 3.50E-26 |
| Glyur002213s00037359.1 | PF01486.12 | K-box | 103 | 160 | 5.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.560 |
| SRR1783600 | control | 0.578 |
| SRR1783602 | moderate drought stress | 0.546 |
| SRR1811619 | moderate drought stress | 0.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.664 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.743 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.063 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.101 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.100 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.041 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.697 |
| SRR9715740 | Leave | 1.406 |
| SRR9715741 | Leave | 0.840 |
| SRR9715739 | Root | 0.486 |
| SRR9715742 | Root | 4.399 |
| SRR9715743 | Root | 5.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.038 |
| SRR8749030 | Uninduced | 0.082 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.897 |
| SRR8400027 | Control-Root | 2.159 |