Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur002216s00042610.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28720.1	0	Flavin-binding monooxygenase family protein
NR	XP_003537140.1	0	PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA8-like [Glycine max]
COG	NP_108142.1	4.00E-82	dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099]
Swissprot	tr\|Q9SVU0\|YUC8_ARATH	0	Probable indole-3-pyruvate monooxygenase YUCCA8
trEMBL	tr\|K7LHD7\|K7LHD7_SOYBN	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur002216s00042610.1
ATGGAGAACCTATTGTTTCGTCTTGTCGATCATGATCAAAACATATTCTCCTCGCGTCGTTGCATTTGGGTGAACGGTCCTGTTATTATAGGTGCAGGACCATCGGGTCTAGCAACAGCAGCATGTTTAAGAGAACAAGGTGTACCCTTCATGGTTCTAGAGAGAGAAGATTGCATAGCCTCACTATGGCAAAAAAGAACCTACGACAGGTTAAAGCTTCACCTTCCAAAACAATTCTGCCAACTACCAAATTTCCCATTCCCAAAGGATTTCCCTGAATACCCAACAAAGAAACAGTTCATTGAATACCTTGAGTCCTACGCAAGGGAATTCGAGATCAAACCTCGGTTTAACGAGTGTGTTCAATCCGCTAGGTACGATGACACCAGCGGATTGTGGAGGGTTACGACCAACGAGGAGTTTGAGTATATCTGTAGGTGGCTCGTTGTGGCTACGGGTGAGAATGCGGAGTGTGTTGTGCCTGATATTGATGGGCTTGGTGAGTTTGAAGGTGATGTTATTCATGCTTCTGAGTATAAATCAGGGGAACGGTTTAGGGGAAAGAAAGTGTTGGTTGTTGGTTGTGGCAATTCTGGGATGGAGCTCTCTCTTGATCTTTGCAATCACAATGCTTCTCCCTCCATCGTTGTTCGTAGCNCGGTTCATGTGTTGCCTAGAGAAGTGTTTGGGAAATCGACATTTGAATTGGCGGTTTTGATGATGCAATGGTTGCCACTTTGGCTAGTTGACAAGATCCTTTTGATCTTGGCGTGGTTGGTGTTGGGTAGCATGGACAAGTACGGGCTGAAAAGGCCATCAGAGGGTCCATTGGAGCTGAANAACACAAAGGGGAAGACCCCTGTTTTGGACATTGGCACCTTGGGGAAAATTAGATCCGGTGACATAAGAGTCGTGCCCGGAATCAAGAGGTTCACCGGCGGCGGCGGCGTTGAGCTTGTTGACGGTGAAAACCACCACGTTGATGCTGTTGTCCTTGCTACCGGATACCGCAGCAATGTCCCTTCTTGGCTTCAGGAAGGTGAATTCTTCTCCAAGAATGGGTTCCCAAAGTCACCATTTCCTAATGGTTGGAAAGGGAAAGCAGGGCTTTATGCTGTTGGGTTCACAAGGAGAGGGCTCTCTGGTTCTTCCTCTGATGCTATGAAAATCGCTCAAGATATTGGCCAAGTCTGGAAACAAGAGACTCGCCAAAAGAAACACCCCACCACTGCTTGCCATAGACGTTGCATTTCCCAGTTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02216	31063	33280	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11816	YUCCA	EC:1.14.13.168	Tryptophan metabolism	map00380

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0004499 N,N-dimethylaniline monooxygenase activity GO:0016491 oxidoreductase activity GO:0050660 flavin adenine dinucleotide binding GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002216s00042610.1	PF00743.14	FMO-like	29	341	1.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.008
DRR006522	Root Winter glycyrrhizin high producing strain	0.085
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.146

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.160
SRR2868004	Drought Stress(Tissue:root)	0.525
SRR2967015	Control (Tissue:root)	0.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.053
SRR9715740	Leave	0.000
SRR9715741	Leave	0.100
SRR9715739	Root	0.000
SRR9715742	Root	0.049
SRR9715743	Root	0.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.022
SRR8400027	Control-Root	0.182