Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur002219s00033068.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14650.1	9.00E-127	Pectin lyase-like superfamily protein
NR	NP_001238091.1	0	polygalacturonase PG1 precursor [Glycine max]
COG	YP_001820212.1	1.00E-25	galacturan 1,4-alpha-galacturonidase [Opitutus terrae PB90-1]
Swissprot	tr\|Q949Z1\|PGLR4_ARATH	1.00E-98	Polygalacturonase At1g48100 (Precursor)
trEMBL	tr\|Q9SWS3\|Q9SWS3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G00230.1}

Sequence

Transcript Sequence

>Glyur002219s00033068.1
ATGAACCTAANCACCATTACATTGATCATTGCCATTGCCTTTTCTGTCTGGTCTTCCAGTTTTGGAAGCTGCAGTGCCACACGTAGTTGGAGGAAACTCAAAGCTTCCTCTTCTACTTTTAATGTATTAGACTACGGTGCTAAAGGTGATGGACATGCAGATGACACAAAGGTGAATGAGAGCTACTCTATTATTCTCCCCCACAATATTTCCCCTGCTATATGTACCTTGCAATGGCTTGAGTTCACAAAGCTGAACAAGATTACAATAAAAGGAAAAGGTGTCATTGATGGTCAAGGCTCTGTCTGGTGGAATAATGACTCACCCACTTACAATCCCACTGAAGAAGAAGAATCAACCAATAATAGCACTGTTATTTTCCAACAGATAAAAGCAAACAGTGGNAAACTTCCAGGAACCAAACCAACAGCACTCAGGTTCTATGGGAGTGATGNTGTAACAGTCACAGGTATAACAATTCAGAACAGTCAGCAAACCCATCTCAAGTTTGATTCATGCACAAATGTTCAGGTCTTTGATATAACGGTTTCATCACCTGGGGATAGCCCCAACACTGATGGAATCCACCTACAGAACTCCCAAAACGTGGTCATCTACAGTAGCACACTTGCTTGTGGCGACGATTGTGTCTCCGTACAAACTGGATGCTCCAACATATTGGTACACAATGTCAATTGTGGACCTGGTCATGGAATNAGTATTGGAAGTCTTGGAAAAGAGAACACCAAAGCATGTGTCACAAATGTCACCGTCCGTGACGTTACACTCCACAACACCTTGACCGGTGTGAGAATAAAAACATGGCAGGGAGGCTCAGGCTCAGTTCAAAACGTGATGTTCTCAAACATTCAAGTNTCTGATGTGGAAACTCCAATCACAATTGACCAATACTATTGTGATGGTGGCAAGAAGTGCCGTAACGAGACATCAGCTGTGGCAGTGTCAAGCATACACTACACAAATGTAAAAGGAACATACACTAAGAAGCCTATCTACTTTGCATGCAGTGACAACTTACCATGTACCGGTATAACGCTGGATACCATACAACTAAAACCAAGCCAAGAATCCAATAATGTTNTTCCTTTTTGTTGGGAAACATATGGGAAGCTGAAAACCACAACAGTTCCTCCTGTTGATTGTCTTGAAAGAGGAAACCCATCAGGCACTGGAATCAATTCCAACAAAGATTCTTGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02219	12997	16026	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01184	E3.2.1.15	EC:3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002219s00033068.1	PF00295.12	Glyco_hydro_28	77	113	4.40E-06
Glyur002219s00033068.1	PF00295.12	Glyco_hydro_28	133	361	2.50E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.525
SRR1783600	control	16.697
SRR1783602	moderate drought stress	12.989
SRR1811619	moderate drought stress	12.980

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.632
DRR006524	Root Summer glycyrrhizin low producing strain	3.816
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.067
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	62.560
SRR2868004	Drought Stress(Tissue:root)	5.153
SRR2967015	Control (Tissue:root)	9.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.051
SRR9715739	Root	1.331
SRR9715742	Root	1.104
SRR9715743	Root	2.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.055
SRR8749029	MeJA induced 9h	0.199
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	30.834
SRR8400027	Control-Root	59.254