Gene detail

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Gene detail information of Glyur002219s00033070.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14610.2	0	DEAD box RNA helicase family protein
NR	XP_003524550.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform X1 [Glycine max]
COG	YP_004671991.1	1.00E-93	ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Swissprot	tr\|Q9LYJ9\|RH46_ARATH	0	DEAD-box ATP-dependent RNA helicase 46
trEMBL	tr\|K7KNL8\|K7KNL8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G08750.2}

Sequence

Transcript Sequence

>Glyur002219s00033070.1
CATTCATTCACTTTTCGTTTCTTCTACTTCCTCCTTTTCCCCCCCACTCGTTTTCCGAAGCGTGCCGTCGGGGTCTGAGACTCCGAAATCCATCCCTAAATTCTAGAGAGAGAAACTCCGGCCTCTTGAGAGAGAAACGCCAGTCCTAGAAACGCATAATCTACGGCCACTACTCGCTCCTCAAAAGGATTGCATTGTTGGTTCACTTGCTATGGCTGCTACAGCAACTGCCTCTTCAGTGGGTCCACGATATGCACCACCAGACCCGACACTCCCTAAACCGTGGCGGGGTCTTGTGGATGGCAAGACCGGGTATCTTTACTTTTGGAACCCTGAGACTAATGTCACCCAGTATGAAAGGCCTTCGAGCTNAACTGCCCCACCAAAGACGTCTTCGGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCATCTCAAGGACAGCGTGGTCGCAGTCCTGATTTGAATGATAGGTATGATAGAAATGGAAGTGGTGGGTCAAACGAAGGTGGATCCCGGAACCATCAGAGTTCCAAAGGTGGAAGTTTTAGTTCTCACAATGTTCCAAATGGAGCACATGTTGCTGGNAATGTTAGTTCTTCTCTCAGAGGTCATGGGGCATCAGATGCTGGAGCTGGATTATCTCCAGAGTCTTATAGACGTCGTCATGAGATAACCGTTTCTGGAGATAATGTGCCTCCACCTTTTGCATCATTTGGTTCTACTGGCTTTCCATCTGAGATTCTTAAAGAGGTACAAAGTGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCGTGGCCGATTGTCCTTCAAAGTAGAGATATAGTTGCTATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTAATCCCAGCATTTATTCACCTCAAGCGCTGTGGTAATAACTCCAGAATGGGTCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTAGCGACACAGATACAAGATGAAGCTGTGAAGTTTAGTAAATCATCGAGAATTTCTTGTGCATGTTTGTATGGAGGAGCGCCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTTGTGCTAGATGAGGCAGACAGGATGCTGGACATGGGGTTTGAGCCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTTCTGGTCAATCCNGTCCAGGTGAACATTGGCAATGTTGATGAGCTTGTTGCTAATAAGTCCATTACTCAGCATATTGAAGTTTTGGCACCAATGGAGAAACACCGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACAAAGAAAATGTGTGATCAACTTGCTCGCAATCTTTCGCGCCAGTTTGGAGCTGTTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTGGCCACTGATGTTGCGGCTCGAGGACTGGACATTAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACTGGAGTGGAAGATTATGTCCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTTTGCGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAGTCTTAGAAGGTGCAAACCAGCGAGTCCCTCCAGAACTTCGTGATATGTCATCGAGGGGTGGAGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGCCGCGGTGACNCTGGTTTTGGTGCAAAGAGTTACGACTCTGGATATGGTGGAAGGGGTAATAATGCAGGATATGGTGGAAGAGGCAGTGANTCAAATNATGGAGGAAGGGGTGGATTTGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGATCTGACTATGACTCACAGAGGAATGATCGTGGTCGAAGCCCTGACAGGGGATCTAGTTGGAGTGATCGCTACAAAAGTGTCAACCGTGAACGCAGCCGTAGTCGTAGTCCTGACAGGGCTGCACCACCTCAATATTCCCAGGTCAGCTTTCACAAAGCTATGATGGAACGCAGTGGAGGGGAAAGTGATCGCANCAAAAGCTTTAACCAGGTGCGAAGCCGCAGTCCTAGTCCTTATAGACAGGAGAGGGCCCCAGCAGGTCGTGAACGATCCCCAGTTAACAGTTTTCATCGATCAATGTTGGGACAAGGTCAACCATCCTTTTCATCTCAACGGCAGCATGTCCCGCACAGCGATGAGAGTTATAAAGAGGAAAAGAGTTCTNGATATGCACGGAGTCCTCCCCGAAGGTCACCATCCTCCCCTGGTGGTGGTAGGGCTAACAATAGTCCCCAGAAAGAGTGGGGAGTATCTTCAGGTGATGGAAAATATGGTGGGTCTCATANTTACAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCAAGATGATTCCATATATCAAAGCGTGGATTAGGATTTTGGCTGTCCCTGCTTTGACCATGTGTTAAGGTTTACNTATGTCAAGGTTATTTTGGTCCGACTTTTGCGAGTGCAAGGGCGTTGTTGCTTGAACACGGGTGTGTTAGGATCTGGTAGTTGAATTCATGGCAAATGTATATTTTGAGGGGCTGATCAGTAGAAGCCGCCTATAAAAATGGCATAGATTAAGAACCTAGCAACGAATATGTCAAATGTTTTCTTTTTGTTATTTTGGTAAAAGTTGAGTTTATATCCAGGTTCATTGTTCCACACAATCAGACTAGAATATATATATATATTCAGCGACAATGAAATGTTGAATTCGCCGTTTGCCTACTGAGTGGCAGCGTAGTTTTGGTGAAAGAAAGCAGCGAACGAATGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02219	32328	37715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12823	DDX5, DBP2	EC:3.6.4.13	Spliceosome	map03040
			Transcriptional misregulation in cancers	map05202
			Proteoglycans in cancer	map05205

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002219s00033070.1	PF00397.21	WW	21	51	5.20E-06
Glyur002219s00033070.1	PF00270.24	DEAD	190	360	6.60E-46
Glyur002219s00033070.1	PF00271.26	Helicase_C	434	505	1.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.692
SRR1783600	control	28.432
SRR1783602	moderate drought stress	53.010
SRR1811619	moderate drought stress	52.513

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.331
DRR006520	Root Summer glycyrrhizin high producing strain	46.631
DRR006521	Root Winter glycyrrhizin high producing strain	51.209
DRR006522	Root Winter glycyrrhizin high producing strain	51.264
DRR006523	Root Summer glycyrrhizin low producing strain	66.715
DRR006524	Root Summer glycyrrhizin low producing strain	66.994
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	67.172
SRR2868004	Drought Stress(Tissue:root)	59.590
SRR2967015	Control (Tissue:root)	67.829

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	30.652
SRR9715740	Leave	36.327
SRR9715741	Leave	39.905
SRR9715739	Root	54.473
SRR9715742	Root	71.533
SRR9715743	Root	65.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.709
SRR8749028	MeJA induced 9h	74.314
SRR8749029	MeJA induced 9h	53.528
SRR8749030	Uninduced	43.406
SRR8749031	Uninduced	33.523
SRR8749032	Uninduced	44.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	66.879
SRR8400027	Control-Root	57.945