Gene detail information of Glyur002219s00033070.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14610.20DEAD box RNA helicase family protein
NRXP_003524550.10PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform X1 [Glycine max]
COGYP_004671991.11.00E-93ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Swissprottr|Q9LYJ9|RH46_ARATH0DEAD-box ATP-dependent RNA helicase 46
trEMBLtr|K7KNL8|K7KNL8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08750.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold022193232837715+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12823DDX5, DBP2 EC:3.6.4.13 Spliceosome map03040
Transcriptional misregulation in cancersmap05202
Proteoglycans in cancermap05205


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002219s00033070.1PF00397.21WW21515.20E-06
Glyur002219s00033070.1PF00270.24DEAD1903606.60E-46
Glyur002219s00033070.1PF00271.26Helicase_C4345051.90E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.692
SRR1783600control28.432
SRR1783602moderate drought stress53.010
SRR1811619moderate drought stress52.513

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.331
DRR006520Root Summer glycyrrhizin high producing strain46.631
DRR006521Root Winter glycyrrhizin high producing strain51.209
DRR006522Root Winter glycyrrhizin high producing strain51.264
DRR006523Root Summer glycyrrhizin low producing strain66.715
DRR006524Root Summer glycyrrhizin low producing strain66.994
DRR006525Leaf Summer glycyrrhizin high producing strain28.418
DRR006526Leaf Summer glycyrrhizin high producing strain28.239

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.172
SRR2868004Drought Stress(Tissue:root)59.590
SRR2967015Control (Tissue:root)67.829

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.652
SRR9715740Leave36.327
SRR9715741Leave39.905
SRR9715739Root54.473
SRR9715742Root71.533
SRR9715743Root65.138

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.709
SRR8749028MeJA induced 9h74.314
SRR8749029MeJA induced 9h53.528
SRR8749030Uninduced43.406
SRR8749031Uninduced33.523
SRR8749032Uninduced44.822

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.879
SRR8400027Control-Root57.945