Gene detail information of Glyur002219s00033070.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G14610.2 | 0 | DEAD box RNA helicase family protein |
NR | XP_003524550.1 | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform X1 [Glycine max] |
COG | YP_004671991.1 | 1.00E-93 | ATP-dependent RNA helicase DBP2 [Simkania negevensis Z] |
Swissprot | tr|Q9LYJ9|RH46_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 46 |
trEMBL | tr|K7KNL8|K7KNL8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08750.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02219 | 32328 | 37715 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K12823 | DDX5, DBP2 | EC:3.6.4.13 | Spliceosome | map03040 |
Transcriptional misregulation in cancers | map05202 | |||
Proteoglycans in cancer | map05205 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002219s00033070.1 | PF00397.21 | WW | 21 | 51 | 5.20E-06 |
Glyur002219s00033070.1 | PF00270.24 | DEAD | 190 | 360 | 6.60E-46 |
Glyur002219s00033070.1 | PF00271.26 | Helicase_C | 434 | 505 | 1.90E-27 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 28.692 |
SRR1783600 | control | 28.432 |
SRR1783602 | moderate drought stress | 53.010 |
SRR1811619 | moderate drought stress | 52.513 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 47.331 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 46.631 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 51.209 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 51.264 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 66.715 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 66.994 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.418 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.239 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 67.172 |
SRR2868004 | Drought Stress(Tissue:root) | 59.590 |
SRR2967015 | Control (Tissue:root) | 67.829 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 30.652 |
SRR9715740 | Leave | 36.327 |
SRR9715741 | Leave | 39.905 |
SRR9715739 | Root | 54.473 |
SRR9715742 | Root | 71.533 |
SRR9715743 | Root | 65.138 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 56.709 |
SRR8749028 | MeJA induced 9h | 74.314 |
SRR8749029 | MeJA induced 9h | 53.528 |
SRR8749030 | Uninduced | 43.406 |
SRR8749031 | Uninduced | 33.523 |
SRR8749032 | Uninduced | 44.822 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 66.879 |
SRR8400027 | Control-Root | 57.945 |