Gene detail information of Glyur002226s00031312.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45140.10nuclear RNA polymerase C2
NRXP_006583557.10PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform X1 [Glycine max]
COGYP_001013739.10DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM 5456]
Swissprottr|Q42877|RPB2_SOLLC0DNA-directed RNA polymerase II subunit RPB2
trEMBLtr|K7L1D3|K7L1D3_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold022261290935067+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03021RPC2, POLR3B EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Cytosolic DNA-sensing pathwaymap04623
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0032549  ribonucleoside binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002226s00031312.1PF04563.10RNA_pol_Rpb2_1584444.10E-49
Glyur002226s00031312.1PF04561.9RNA_pol_Rpb2_22093848.80E-21
Glyur002226s00031312.1PF04565.11RNA_pol_Rpb2_34605256.30E-21
Glyur002226s00031312.1PF04566.8RNA_pol_Rpb2_45636211.40E-18
Glyur002226s00031312.1PF04567.12RNA_pol_Rpb2_56436831.40E-12
Glyur002226s00031312.1PF00562.23RNA_pol_Rpb2_668910666.30E-118
Glyur002226s00031312.1PF04560.15RNA_pol_Rpb2_7106811595.30E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.316
SRR1783600control11.267
SRR1783602moderate drought stress13.854
SRR1811619moderate drought stress13.471

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.009
DRR006520Root Summer glycyrrhizin high producing strain10.683
DRR006521Root Winter glycyrrhizin high producing strain9.166
DRR006522Root Winter glycyrrhizin high producing strain8.943
DRR006523Root Summer glycyrrhizin low producing strain7.984
DRR006524Root Summer glycyrrhizin low producing strain7.998
DRR006525Leaf Summer glycyrrhizin high producing strain4.946
DRR006526Leaf Summer glycyrrhizin high producing strain4.919

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.550
SRR2868004Drought Stress(Tissue:root)14.304
SRR2967015Control (Tissue:root)12.902

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.230
SRR9715740Leave9.343
SRR9715741Leave7.769
SRR9715739Root1.316
SRR9715742Root9.737
SRR9715743Root9.815

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.878
SRR8749028MeJA induced 9h22.377
SRR8749029MeJA induced 9h16.296
SRR8749030Uninduced4.391
SRR8749031Uninduced4.553
SRR8749032Uninduced3.559

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.435
SRR8400027Control-Root19.841

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved