Gene detail

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Gene detail information of Glyur002232s00037159.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10530.1	5.00E-151	Concanavalin A-like lectin protein kinase family protein
NR	XP_003628872.1	0	Lectin receptor-like kinase Tg-20 [Medicago truncatula]
COG	YP_001958461.1	9.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	0	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|G7LII2\|G7LII2_MEDTR	0	Lectin receptor kinase {ECO:0000313\|EMBL:AET03348.1}

Sequence

Transcript Sequence

>Glyur002232s00037159.1
ATGAACTCGCAGCTGCTGCTTCTGGTACAAAGCAACGACGTGAAGCTGTTTCTGGTCCATGTTCAACAACAAGTAGCCAAGAGCCCAGATCAGTTCCTGCGAGAAAGGGCCCCACATAGAGGAAGAGGAGGAGGAAAGGGGAAGAAGAAGAACGGAAAAAACAGAGAAAAATCGTCCTTCGAATTCCCCAATTTTTCAGGGGCATACAGAAACGACATCATNATCTACCAAGGCGACGCCTTTGCATCATCCAAGGGAACCACACGACTTACAAAGACCAAAAACGACACAAACATGCCTCACAGTTCTGGCAGAGCCTCCTATGCTTTGCCACTGCGCCTTTGGGATACCACATCTAACATGCTAGCAAGCTTCACAACAACCTTTTCTTTTGTTGTGACAACAACAAAAGAACCAGTACTAGGAAATATTGGAGACGGAATCACATTCTTCATTGCACCGTATCACTNTGACATTCCAGAATCTTCGGATGGTGGATACCTGGGTCTCTTCAGCCCCGACACTGCTTTAACCGCTTCTCGAAACAAGATTGTTGCTGTTGAATTTGACACGTTCCCGAATAAATGGGATCCTCCCTTTGCGCATGTGGGCATTGATGTGAACTCCANTGGCTCATTGACAATGGTGCGGTGGGGAAATGAAAATATTGATAGCAACAACGTTGAGCTACACTTTGGCCACTCCACCAAACAACCACCACCATTCTCTACTTCTTGTCCCCTCCTCTGCCTTGCTTTCATGGCTCTCTTCACCTCAGTTTCAAACTGCAACCAAACCCAAAAAACCTTCCTTTCCGTATTCATCACCACCCTCACTCTGTTCAATTCANTCTTCAACAAAGCAGAGTCAATTTCCTTCAACTTCTCTACTTTCCCACCAAACTTATACAATCTAATAGATTTCCAACGCGATGCCTTCTCCTCAAACGGTGTTCTTCAACTCACAAAGAACCAACTCGATGGCCCCATCACAAGCAGTGTTGGTCGTGCCTCATATGGTCAAAGAGTGAAGCTTTGGGATAAAGGAACAAAACAACTCACAGATTTCACAACCCATTTCTCATTCGTGATGAAAGCTGTTGAAACAAAATTTGGTGATGGGTTATCCTTCTTCATTGCCCCATTTGAATCTCAAGTCCCAGAAAATTCAAGTGGTGGGTACCTTGGTTTATTCAACAGGGAATCTGCATTCAACACTAGCAAGAACCAAATNGTTGCAGTTGAGTTTGATAGCTTCATGAATGAGTGGGATCCAAGCTCTGACCATGTNGGAATTAATGTTAATTCCATCGAATCGGTTAAGAATGTTACTTGGAGGAGCAGCATTAAAAACGGGTCAGTTGCTAATGCTTGGATATCATACAATTCNACTTCAAAAAACCTCTCTGTCTTCCTTACTTATGCTAATAACCCAACCTTCGATGGCAACAATTCTAGTCTCTCCCATGTCATTGATTTGNGGGATGTTTTGCCAGAGTTTGTTAGGATTGGGTTCTCTGCTGCCACNGGTCAATGGTTTGAGATACACAACATTCTATCTTGGTCATTCGATTCAAACTTGGACAGTGGTGATGGGAAGAACANCAAGGTTGGTTTAGGAGTTGGTTTAAGTGTTGGGTTTGGTTCTTTAACTTGTGTTGTGGGTCTTCTATGGTTCACCTTTTGGAGAAAAAGAAAAGGACCAAATAAGGGAGTACTAGAAAGGGATGATGACAACACTGCAGGTTTTGATGTTTCTATGGATGATGAAGAATTTGAGAAAGGNACTGGTCCAAAAAGGTTCACCTATAAGGAACTAAGCAATGCAACCAATGGGTTTGAAGAAGAAGGAAAGCTTGGAGAAGGAGGGTTCGGAGGTGTTTACAAAGGTTTTCTTCACAACCTCCAAGTGGCAGTGAAGAGGGTGTCAAAAGGATCGAGACAAGGNAAAAAGGAATACATATCAGAAGTGAGAATAATCAGCAGGTTNAGACACAGAAATTTGGTTCAACTCTTAGGGTGGTGCCATGAGCAAGGTGAGCTACTTCTTGTTTATGAGTACATGCCTAATGGAAGCCTTGATTCCCATCTATTTGGGAAAATGGACATGCTTACATGGACAGTTAGGTACAAGGTAGCTTTGGGTTTGGCTTCTGCTCTTCTTTATCTTCATGAGGAGTGGGAACAATGTGTGGTGCACAGAGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGGGACTTTGGTCTTGCAAGGCTAGTGGATCATGAACTTGGCTCTCAAACTACTGTTTTGGCAGGAACCATGGGGTACCTAGCCCCAGAATGTGTCACGACAGGGAAGTCCAGCAAGGAATCTGATGTTTACAGCTTTGGTGTGGTTGCACTTGAAATCACATGTGGTAGAAGACCGGTTGAGGCAAGAGAAGAGCCTGCCAAAGTTAGGCTTGTGGAGTGGGTTTGGGATCTCTATGGGAAAGGGAAAGTACAAGAAGCTGCTGATGGGAGATTGGATTTGGAATTTGATGAGAAGCAAATGGAATGCTTGATGGTGATTGGGTTGTGGTGTTGTCATCCTGATCATACCATGAGGCCTTCCATTAGGCAAGTGATCAATGTTCTCAATTTTGAAGCTCCTTTGCCTAGTCTTCCATCAAAGTTGCCTGTGCCAATGTACTTTGCACCTCCCATGGAGATGTGTAGATTCTCCTATACTTCACCTGGCCCCACAAGCACAAGCACAACCAAAGAATCTTCCACATACTCATCAATGTCAGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02232	7537	30321	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002232s00037159.1	PF00139.14	Lectin_legB	57	217	4.90E-38
Glyur002232s00037159.1	PF00139.14	Lectin_legB	290	523	4.50E-62
Glyur002232s00037159.1	PF00069.20	Pkinase	614	878	1.70E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.103
SRR1783600	control	2.766
SRR1783602	moderate drought stress	2.296
SRR1811619	moderate drought stress	2.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.011
DRR006520	Root Summer glycyrrhizin high producing strain	0.011
DRR006521	Root Winter glycyrrhizin high producing strain	0.039
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.011
DRR006524	Root Summer glycyrrhizin low producing strain	0.022
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.047
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.019

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.414
SRR2868004	Drought Stress(Tissue:root)	7.719
SRR2967015	Control (Tissue:root)	7.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.075
SRR9715740	Leave	0.044
SRR9715741	Leave	0.756
SRR9715739	Root	0.189
SRR9715742	Root	4.283
SRR9715743	Root	3.472

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.104
SRR8749028	MeJA induced 9h	0.135
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.006
SRR8749031	Uninduced	0.004
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.429
SRR8400027	Control-Root	4.219