Gene detail information of Glyur002236s00041371.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54990.1 | 8.00E-06 | RING/U-box superfamily protein |
| NR | XP_004517011.1 | 1.08E-21 | PREDICTED: E3 ubiquitin-protein ligase RNF12-like [Cicer arietinum] |
| Swissprot | tr|P0C035|ATL60_ARATH | 2.00E-10 | RING-H2 finger protein ATL60 |
| trEMBL | tr|V7BFW6|V7BFW6_PHAVU | 1.00E-16 | Uncharacterized protein {ECO:0000313|EMBL:ESW15738.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02236 | 3008 | 3589 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002236s00041371.1 | PF13639.1 | zf-RING_2 | 143 | 188 | 1.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.185 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.110 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.085 |
| SRR2967015 | Control (Tissue:root) | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.057 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.106 |
| SRR9715743 | Root | 0.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.291 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.004 |
| SRR8400027 | Control-Root | 0.000 |