Gene detail information of Glyur002236s00041373.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05460.1 | 9.00E-51 | RNI-like superfamily protein |
| NR | KEH34671.1 | 4.53E-76 | F-box/LRR protein [Medicago truncatula] |
| Swissprot | tr|Q9M0U9|SKI19_ARATH | 2.00E-60 | F-box protein SKIP19 |
| trEMBL | tr|A0A072UZ00|A0A072UZ00_MEDTR | 2.00E-76 | F-box/LRR protein {ECO:0000313|EMBL:KEH34671.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02236 | 14356 | 16387 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002236s00041373.1 | PF12937.2 | F-box-like | 23 | 68 | 2.20E-07 |
| Glyur002236s00041373.1 | PF13516.1 | LRR_6 | 117 | 138 | 1.4 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.972 |
| SRR1783600 | control | 8.864 |
| SRR1783602 | moderate drought stress | 5.928 |
| SRR1811619 | moderate drought stress | 6.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.573 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.251 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.116 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.003 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.843 |
| SRR2967015 | Control (Tissue:root) | 22.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.558 |
| SRR9715740 | Leave | 4.190 |
| SRR9715741 | Leave | 2.929 |
| SRR9715739 | Root | 3.712 |
| SRR9715742 | Root | 5.595 |
| SRR9715743 | Root | 6.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.738 |
| SRR8749028 | MeJA induced 9h | 20.345 |
| SRR8749029 | MeJA induced 9h | 11.025 |
| SRR8749030 | Uninduced | 5.344 |
| SRR8749031 | Uninduced | 1.705 |
| SRR8749032 | Uninduced | 1.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.442 |
| SRR8400027 | Control-Root | 11.166 |