Gene detail information of Glyur002267s00039342.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45220.1 | 1.00E-162 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003521940.1 | 0 | PREDICTED: pectinesterase 2-like [Glycine max] |
| COG | YP_003404589.1 | 1.00E-30 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|O04887|PME2_CITSI | 0 | Pectinesterase 2 (Precursor) |
| trEMBL | tr|I1JKR7|I1JKR7_SOYBN | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02267 | 161 | 2010 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002267s00039342.1 | PF04043.10 | PMEI | 29 | 172 | 8.80E-22 |
| Glyur002267s00039342.1 | PF01095.14 | Pectinesterase | 208 | 401 | 3.60E-87 |
| Glyur002267s00039342.1 | PF01095.14 | Pectinesterase | 402 | 441 | 6.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.054 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.135 |
| SRR8749028 | MeJA induced 9h | 1.437 |
| SRR8749029 | MeJA induced 9h | 1.935 |
| SRR8749030 | Uninduced | 194.100 |
| SRR8749031 | Uninduced | 894.072 |
| SRR8749032 | Uninduced | 402.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.042 |
| SRR8400027 | Control-Root | 0.006 |