Gene detail

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Gene detail information of Glyur002268s00033547.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.1	2.00E-96	Protein kinase superfamily protein
NR	XP_003589630.1	0	Kinase R-like protein [Medicago truncatula]
COG	YP_001958461.1	3.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	5.00E-98	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|G7I961\|G7I961_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES59881.2}

Sequence

Transcript Sequence

>Glyur002268s00033547.1
TTGCTCAACATAATGGTAAAAATGTTCTCTTCCATTGGACTGTTGTTGTTCATGGTTTGCGTTAATGCTGGGGAGCATGCAGTTGGGACAGGCACAGTTAAGTGTCCAGATTTATCATGCAGAGATCAGGTCATCCGGTTCCCTTTCCGGATCAAAGGCCGCCATCCACCACCCTGCGGCTTTCCCGGCTTTGATTTATCTTGTTCCTCAAGTAATGAGACTCTAATTGAACTCCCTGAATCAGTGACGCTCACCGTAAAAAATATTGACTACACACAACAAACTATTGAGTTGTCTGATCCAGATGGTTGCCTTTACAGACAGCTCCACAACCTCACACTATCAGCCTCTCGTTTCCAGTTCAAGCCCAAGCCCGACTATGATGATTTTGGTGCCTATCAATTGTTCAATTGTTCACTGATGAATAGAGATTCGCGGTTGGACTACTTTTTGGTTCCGTGCCTATCCATCTCAACCTCTCAAGCATATGCCATTCCGTCTAGTAGATCCATCGGGTACCTGCCCCTGTCGTTTTGCACCAAAATGTTTAATATTCCAGTCAACCCATTTTATTATCTTCACAATGACAACTTTCTTCGTATGACATGGTCTGAGCCAAAGTGTAAACATTGTGAATCTAAGGGAAAAAGATGTGGGTGGAACTGGAAGAATAACACTGCCAACAAGGAAATATATTGTTTCCCCAAAAACCACAAAGGGTCAGTCCTCGGATCACTGTTTTTTATCCTCTTGACTGGTGCAGTCTACCACATCTATGACTCGTACATGCTGAAGAAAGAAAAACAAGCAATTATAGAAAAATTTCTACAAGACTATAGGGCTCTTAAGCCCACCAGATACTCTTATGCGGAAATCAAGAGAATCACCAACAATTTTGGGGACAAGTTGGGACAGGGAGCCTATGGAACTGTGTATAAAGGNANCATTTCNAAGGANTTTACAGTTGCTGTGAAGATCCTGAATGTTTCCCAAGGAAATGGGGAAAACTTCATCAATGAAGTTGGTACAATGGGTAGAATCCACCACGTTAACATTGTTCGCTTGGTCGGTTTCTGCGCCGATGGCTTTATAAGAGCTCTTGTCTACGAGTTCTTGCCAAACGGGTCACTGCAGAAGTTCATAAATTCACCAGACAANAGGCAAAACTTCCTTGGTTGGAAAAGGCTGCANGAAATTNCTNTAGGAATAGCTAAAGGGATTGAGTACCTCCATCAGGGTTGTGATCAGCGTATTCTCCATTTTGATATCAAACCACAAAATGTGTTGCTAGATNNNAACTTTGNTCCAAAAATATNTGACTTTGGTCTAGCTAAATTGTGTTCAAGGGATCAGAGCATAGTGTCAATGACCACAGCTAGAGGAACTTTGGGCTACATTGCTCCCGAAGTTTTCTCAAGGAACTTTGGAAANGTGTCTTNCAAGTCAGATGTTTATAGTTANGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACGGAGGACTTAGGGGAAAACACTGGCCATGTTTACTACCCAGAATGGATTTATAATCTTTTGGAAGAACGGGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAACGATTGCAAGGAAATTGGCCATTGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGATGGGGACAGAACCCCAATACCTCCTAATCCTCTTGCCTCTGGTTCTGGAGGACCAAGGAGAAAGAGGGAAAGTGCAGCTGTGGGTGCAGCTGGTCGACACCTAACCCAAGATTTGGAAGTAATTGAAGAGTTAGATTGACTTGTACTTCCAAATTACAATTGTGAAGGAGCTATCCTTGAGATATTCTAGCATTCAGCTCCAACTATTGTTACGAAATAATAGCAAATAATACATAGCATGTTTCACATCGGTCTCATACAAATTGATGGGCAGGATCATTCAAAATCAACTTTTTTCCTTTATCAAATTGAATTCTTCATATGGTCGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02268	29826	32268	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002268s00033547.1	PF13947.1	GUB_WAK_bind	34	101	2.00E-06
Glyur002268s00033547.1	PF00069.20	Pkinase	300	565	8.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.177
SRR1783600	control	0.175
SRR1783602	moderate drought stress	0.152
SRR1811619	moderate drought stress	0.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.124
DRR006520	Root Summer glycyrrhizin high producing strain	0.228
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.079
DRR006523	Root Summer glycyrrhizin low producing strain	2.268
DRR006524	Root Summer glycyrrhizin low producing strain	2.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.996
SRR2868004	Drought Stress(Tissue:root)	4.266
SRR2967015	Control (Tissue:root)	3.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.837
SRR9715740	Leave	10.246
SRR9715741	Leave	33.442
SRR9715739	Root	0.000
SRR9715742	Root	0.962
SRR9715743	Root	0.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.315
SRR8749028	MeJA induced 9h	21.483
SRR8749029	MeJA induced 9h	14.073
SRR8749030	Uninduced	5.521
SRR8749031	Uninduced	1.505
SRR8749032	Uninduced	3.391

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.778
SRR8400027	Control-Root	2.107