Gene detail

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Gene detail information of Glyur002269s00032420.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61560.1	2.00E-176	U-box domain-containing protein kinase family protein
NR	XP_003598188.1	0	U-box domain-containing protein [Medicago truncatula]
COG	YP_002773206.1	4.00E-22	serine/threonine-protein kinase [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q9SW11\|PUB35_ARATH	0	Serine/threonine-protein kinase
trEMBL	tr\|G7IVM0\|G7IVM0_MEDTR	0	U-box kinase family protein {ECO:0000313\|EMBL:AES68439.1}

Sequence

Transcript Sequence

>Glyur002269s00032420.1
CTTTTTGAAGTGTAAACCAAACCTCTCCCAAATTTTGGATTTTGTATCTGAATCTGGGAAATGGTTTCATTTGGGAAAAAGAGTGAAGTGATGGGAGTGAATCTCTTCTTTTCCAGCTAAGCTTTGAGGCACTCAACAATTTCAAAGCTGCTTTGATTTGATTGGTTAGTTACAATTCTGTTAAGNGAGTTCACTCTCTTCTTCATAAGGGAAGAGAGATGGATAGGATTCGGGAGGCGGATGAAAATAGTAAATCTCAGTGCTCGTCGTCTTCGGTTGTCGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAGTATGTGGTACAGTGGGCACTTAACAAGTTTGTTCCTGAGGGAATGATTGTCTTCAAGCTGATACATGTCCATGCTGGTATAAAAGGCGTTCCAACACCAATGGGAAATGTGCTTCCTATTTCACAAGTGCGTAGTGAAGTAGCAACTGCTTTCAGAAAGGAAGTGGACTGGCAAACAAATCAAATGCTTCTACCTTTTAAGAAAATGTGTGAGCAGAGGAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATGTGGCAATGGCANTAGCAGAGGAAGGTTTTTCTGCGAAAATCTCAGTATGCATTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAGGGAAATTGTTCATACGGCCATCAGACATGCAGATTGTTGGAAGCATTATAGATGATACCAGTGAAACCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCCACCACTCAGACAGATTCTGNCTCAGTTGCATCATATGCTGCTTTACAATCATCTTCCCTGGCAACNCAGCGATTTCAAGCTCTTTCGAGTATAAATCAGACCCTTCTAAGCACAGCTCCAAGTTTAAATGAAACTAATCATACTAGAGGCCAGTCTGTAGATCTTGGGAGAGAGAACGTTGCTACAAGTTCTGCTAGAAACTCGGATATTGATCATACCCTGAGTCGGGCCTCTAGTTGCAGAAGCGTTGTTTCAGATACTGAATCTTGGATTTATGATCAAAATTTTGGCAAGGATGTGCCACTAGCTACTCAACTTCCATCACCAAGTAGGCAGGAAAATTTTAGCCTTGAGTTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCAGTAGCTCAAAGTGAGAACATTGATGCATCACGAAAGCTGAATGAACTAAGCAAGAAGCGATCAGAGGAATCCACGAAGATGGAGGAGATTATTGCCAAGGAGGAGATGGCCAAGGAATTAGCAAGACAAGAAAGAGAGAAATATGAAGCTGCAGCAAGAGAAGCTGCATATTTGAAAGAATGTGNTGAAAGAGAAGCTGCAGAAAGGAAAGAAACAGAGTTGAAAGCTATTCGTGCAGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTAAGTGGTTCCATGCCCCAATATAGAAAGTTTACATGGGATGAAATAGTTTCAGCTACTTCATCTTTTTCTGAAGATCTNAGAATTGGAATGGGTGCATATGGAAAGGTGTATAAGTGCACTTTGTATCATACAACTGTTGCTGTTAAAGTTCTACACTCTAATGGAAGCTGCAAAAGCAAGCAATTCCAACAGGAGGTAGAGATATTGAGCAGAACTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATACATGGAGAATGGTAACTTGGAGGATAGGCTACTCCAGAAAAACAGTAACAACCCAATCCCATGGTTTGAGAGGTTCCGAATAGCTTGGGAAGTTGCGTCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCAGATCCTATAATCCATCGCGACTTGAAGCCGGCAAACATCTTGCTCGGCCGTAACCTTGTCAGCAAGATTGGTGATATTGGCCTTTCAACAATCCTCAGTTCAAATGATTTATCTATCATGTATAAGGACACGGCGCCTGTTGGGACACTCAGCTACATCGATCCTGAGTATCAAAGGAGTGGGCTAATATCTACAAAATCTGATGTTTATGCTTTTGGATTAGTGATCTTACAGTTATTGACAGCAAAACCTGCAATGGCACTCACTCATGTGGTTGAAACAGCGATTGATGCCGGGAATTTAACAGATATATTGGATACAAAGGCAGGCTCATGGCCAATTCAAGAGACACTTGACTTGGCTCGGTTAGCACTGAGCTGCGCGGAGCTTCGACGTAGAGACCGGCCTGATTTGAAAGATCATGTGCTTCCAACACTGGAGAGGTTGAAAGAAATTGCTGATAGGGCTCAACATTCTGCTCCAACAGTTACTATTAAATCCAGACCTCCTAATCATTTTATCTGCCCAATACTTCAGGATGTGATGGATGACCCTTGTGTTGCTGCGGATGGATACACATATGATCGCAAAGCAATTGAAAAGTGGCTTGAAGAGAATGACAAATCACCAATGACAAATATGGCTTTGCCTCATAAGAGTCTAATTCCTAATTACACACTTCTATCAGCAATTTTGGAGTGGAAGTCCAGAGAAATATGATACTGCATTAATCAATCTTTCTCAATGTTGATATTTAGTTCAATTGATTTCTCTAATGTATAGCTTGGATAAAAAGTTCAGTGTGTATGACGTGTGAGGGTGTCTTGGATGCAGATNTGTTTGTATCACTACCATTGCTTACTTGGGGGGCAAGTGTAAATAGTTTTGATTCGAGTAAACAGCCACTTTAGTTCCTGAGAATGTTANACGGTGTCACTTTGGTCCCTGATAGATAGGAAATTATTAAAAGATCCTCAACTCGTGTTTTTGTTGGTCACTTTGGTCCCTGCCGTCAGCAATGTAATCACTTTTAGGGACCAAAATGACAGTTAAATAATCACTTTTAGNGACCAAAATGACAATAAGTAATCACTTTTAGGGACCAGAGTGACTAACG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02269	9168	17716	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.14.2
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0016567 protein ubiquitination

molecular_function GO:0004672 protein kinase activity GO:0004842 ubiquitin-protein transferase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002269s00032420.1	PF07714.12	Pkinase_Tyr	433	683	6.10E-41
Glyur002269s00032420.1	PF04564.10	U-box	713	779	1.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.247
SRR1783600	control	6.260
SRR1783602	moderate drought stress	7.063
SRR1811619	moderate drought stress	7.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.539
DRR006520	Root Summer glycyrrhizin high producing strain	4.733
DRR006521	Root Winter glycyrrhizin high producing strain	3.690
DRR006522	Root Winter glycyrrhizin high producing strain	3.604
DRR006523	Root Summer glycyrrhizin low producing strain	4.129
DRR006524	Root Summer glycyrrhizin low producing strain	4.091
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.282

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	22.479
SRR2868004	Drought Stress(Tissue:root)	27.676
SRR2967015	Control (Tissue:root)	27.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.294
SRR9715740	Leave	19.950
SRR9715741	Leave	35.228
SRR9715739	Root	1.250
SRR9715742	Root	7.538
SRR9715743	Root	7.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.410
SRR8749028	MeJA induced 9h	9.123
SRR8749029	MeJA induced 9h	3.647
SRR8749030	Uninduced	17.996
SRR8749031	Uninduced	12.503
SRR8749032	Uninduced	6.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.183
SRR8400027	Control-Root	11.195