Gene detail information of Glyur002272s00037033.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36090.1 | 2.00E-56 | F-box family protein |
| NR | XP_004513578.1 | 5.87E-126 | PREDICTED: probable F-box protein At1g60180-like [Cicer arietinum] |
| Swissprot | tr|Q9XIN8|FB119_ARATH | 2.00E-78 | F-box protein At2g27310 |
| trEMBL | tr|A0A072VK35|A0A072VK35_MEDTR | 1.00E-120 | F-box protein {ECO:0000313|EMBL:KEH41976.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02272 | 36504 | 37496 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.895 |
| SRR1783600 | control | 19.606 |
| SRR1783602 | moderate drought stress | 35.208 |
| SRR1811619 | moderate drought stress | 35.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.483 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.716 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.336 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.253 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.389 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.018 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.066 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.779 |
| SRR2967015 | Control (Tissue:root) | 18.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.316 |
| SRR9715740 | Leave | 2.289 |
| SRR9715741 | Leave | 2.115 |
| SRR9715739 | Root | 18.010 |
| SRR9715742 | Root | 34.018 |
| SRR9715743 | Root | 27.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.588 |
| SRR8749028 | MeJA induced 9h | 1.559 |
| SRR8749029 | MeJA induced 9h | 2.550 |
| SRR8749030 | Uninduced | 0.346 |
| SRR8749031 | Uninduced | 0.112 |
| SRR8749032 | Uninduced | 0.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.550 |
| SRR8400027 | Control-Root | 24.694 |