Gene detail

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Gene detail information of Glyur002283s00035200.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14210.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006604135.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like isoform X1 [Glycine max]
COG	YP_004775215.1	3.00E-26	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	5.00E-175	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|I1N7N7\|I1N7N7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G25150.1}

Sequence

Transcript Sequence

>Glyur002283s00035200.1
TTGATCAAATTTTGTAGCCTAATGCTCAAAGTTAGTAGTACTCCAATAATGAGATATTTGCATCTCTATTGTCTTGTGGTTCTTTCCTTGTTTTTGTCCATCATCCACAGTACTCATGAGCTACAAGTTGCTCAGACCCAAGTCCTGTTACAGTTAAGGAAGCATCTGGAGTACCCTCCCTCTTTGCAAGTATGGGAAAATTACAATGGAGACCTTTGTGGTCTTTCTCCATCTGCAAAAATGAGTATTAAGTGTGAGGGCAATTCAGTAACTGAGCTTAAAATCATGGGAGATAATAAACCTGTGANGGTTGCTGGAAGGTTCAATGGGTTTGCAGTTCCCAATATGACACTATCCATGAGTTTCTCTATTGATTCTTTTGTCACCACATTGACAAGGTTAACAAGCTTAAGGGTCCTTAGTTTGGTTTCCTTGGGGATATGGGGTCCACTCCCTGATAAGATTCATAGGCTATCTTTGCTTGAGGTTTTGGACTTGAGCTCAAATTTCTTGTTTGGTTCCATCCCACCAAGGNTAGCCACAATGGTAAAGCTTCAAACACTAGCACTTGATGGCAATTACTTTAACAGCACCATGCCTGATTGGTTTGATTCATTGTCTAATCTAAGTGTCTTGAGTTTGAAGAGCAACCACTTGAAGGGTTCATTCCCTTCCTCACTATTCAAAATTAAGAGCCTTATTGATATTTCCTTGTCCCACAATGAGCTTTCTGGTGGATTGCCTGATCTCACAGCTCTCTCTGGCCTACATGTACTTGATTTGAGAGAGAATCTTTTGGATTCTGAACTGCCATTGATGCCAAAAGCAGTAGTCACAGTGCTGCTAAGTAAAAATTCATTCTCAGGTGAGATACCTAGTCAGTTTGGTGAATTGGGTCAGCTTCAACATCTTGATCTTTCATCAAATCATCTTAGTGGGGTTCCCCCATCTTCCTTGTTCTCTTTGCCAAACATTAGTTATTTGGACTTAGCAAGCAATGTGCTAAGTGGGTCCCTTCCACACAAACTGAAGTGTGGCAGCAAACTTGGGTTTGTGGATGTCTCTAGTAACAAGTTGAATGGTGTGGTTCCTTCTTGCTTGGCCAGTACATCTGATAGAAGAGTTGTCAGATATGGTGGGAACTGTTTGTCTACTAATTCTCAACCTCAGAAGCAAGGTTCTTATTGTAAGGGAATCGGTTCAGGAAGGAAGAAGTTATGGAGATGGGAAATGGCTGCAGCAATTGCCATCCTTATTGTAGTTGTTCTTGCATTGATAGCTTTTGGAGTCTTCTTTTACAGAAAATATCATTCAAGAGAGATCTATAGGCATGAGATGTTGCCAAAGGTTGTTCAAGATAACTCAACAACAGGGGTTTCCTCTGAACTCCTTGCTAGTGCCAGATTCATTTCTCAAACAGTGAAGCTAGGGACACAAGCTACTCCAACCTGTCGACNGTTTTCAATTGAAGAGTTGAAGGAAATCACAAGAAACTTTGATTTGTCAGCTTATCTTGGTGAAGGATCCATAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCTTACGTGGTGATACGATCTCTCGCTCTGAAAAAGAAATTCTCAGTACAAAATCTTAAAGCTCGGTTGGATTTACTCTCAAAGCTTCACCATCCAAATCTGGTTAGTCTCTTGGGCCATTGTATTGATGGTAGTAGTGGACAAGATGATACTAGTGCCCACAAACTTCATCTTGTATACGAGTATGTGCCAAATGGGAACTATCGTACCCATCTGTCAGAATTTTCACCAGATAAGGCACTAAAATGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCCAAGGCTGTGCATTTTTTACATACTGGAGTCATACCAGGTTGTTTAAGAAACCAGTTAAAGACGAACAATGTTTTACTTGATGAACATCACATCCCCAAGCTAAGTGACTATGGTATGTCCATGGTTGCTGAAGAGATCGAAAACCTTGAGGCAAAGGGAGAGAATCCAAAATCTTGCCAAAAGGAAGAATTAGAAGACGATGTTTACAATTTCGGGTTCATATTGTTTGAATCACTTGCTGGACCCGTAGCAAGCGAGAAAGGAGAAGCATTTTTCCTTGATGAAAAGGCATCCTTTGACAGTCAAGATGGTAGAAAGAGAATTGTAGATCCTGTAGTGTTGACCACTTGCTGTCCAGAGTCATTATCAATTGCAATATCAATCACAACCAAATGCATATCCACAGAATCCTCATCTCGTCCCTCCTTTGAGGATGTCCTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCTGATCAAAAACCAGATTCTTCTACANCCTAGGTGTGTCCAACAGTGCATNTAAGAAAGCAGGGATAGTTCCTAGGATCTATCAAGTAATATAGCACAATCCAAAGATGTGAATCTTCACTGCAATTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02283	18017	23165	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002283s00035200.1	PF00560.28	LRR_1	161	177	0.91
Glyur002283s00035200.1	PF13855.1	LRR_8	184	243	7.40E-07
Glyur002283s00035200.1	PF13855.1	LRR_8	279	334	9.20E-09
Glyur002283s00035200.1	PF07714.12	Pkinase_Tyr	502	763	1.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.750
SRR1783600	control	0.765
SRR1783602	moderate drought stress	2.476
SRR1811619	moderate drought stress	2.464

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.541
DRR006520	Root Summer glycyrrhizin high producing strain	0.565
DRR006521	Root Winter glycyrrhizin high producing strain	0.181
DRR006522	Root Winter glycyrrhizin high producing strain	0.177
DRR006523	Root Summer glycyrrhizin low producing strain	0.494
DRR006524	Root Summer glycyrrhizin low producing strain	0.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.490
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.540

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.046
SRR2868004	Drought Stress(Tissue:root)	1.685
SRR2967015	Control (Tissue:root)	2.546

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.971
SRR9715740	Leave	3.237
SRR9715741	Leave	4.300
SRR9715739	Root	0.070
SRR9715742	Root	0.738
SRR9715743	Root	0.740

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.555
SRR8749028	MeJA induced 9h	0.320
SRR8749029	MeJA induced 9h	0.470
SRR8749030	Uninduced	0.155
SRR8749031	Uninduced	0.078
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.332
SRR8400027	Control-Root	0.329