Gene detail information of Glyur002291s00037458.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07930.3 | 5.00E-44 | DNA glycosylase superfamily protein |
| NR | XP_004512816.1 | 1.26E-64 | PREDICTED: uncharacterized protein LOC101490359 isoform X1 [Cicer arietinum] |
| trEMBL | tr|B9RKX6|B9RKX6_RICCO | 2.00E-56 | Putative uncharacterized protein {ECO:0000313|EMBL:EEF47991.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02291 | 5468 | 12319 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10801 | MBD4 | EC:3.2.2.- | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.215 |
| SRR1783600 | control | 13.644 |
| SRR1783602 | moderate drought stress | 15.683 |
| SRR1811619 | moderate drought stress | 15.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.017 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.483 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.775 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.678 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.058 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.192 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.885 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.579 |
| SRR2967015 | Control (Tissue:root) | 21.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.134 |
| SRR9715740 | Leave | 19.396 |
| SRR9715741 | Leave | 20.825 |
| SRR9715739 | Root | 11.206 |
| SRR9715742 | Root | 23.544 |
| SRR9715743 | Root | 18.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.277 |
| SRR8749028 | MeJA induced 9h | 26.041 |
| SRR8749029 | MeJA induced 9h | 27.500 |
| SRR8749030 | Uninduced | 15.500 |
| SRR8749031 | Uninduced | 13.048 |
| SRR8749032 | Uninduced | 13.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.759 |
| SRR8400027 | Control-Root | 21.830 |