Gene detail information of Glyur002291s00037458.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07930.35.00E-44DNA glycosylase superfamily protein
NRXP_004512816.11.26E-64PREDICTED: uncharacterized protein LOC101490359 isoform X1 [Cicer arietinum]
trEMBLtr|B9RKX6|B9RKX6_RICCO2.00E-56Putative uncharacterized protein {ECO:0000313|EMBL:EEF47991.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02291546812319+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10801MBD4 EC:3.2.2.- Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002291s00037458.2PF00730.20HhH-GPD491661.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.215
SRR1783600control13.644
SRR1783602moderate drought stress15.683
SRR1811619moderate drought stress15.945

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.017
DRR006520Root Summer glycyrrhizin high producing strain18.590
DRR006521Root Winter glycyrrhizin high producing strain20.483
DRR006522Root Winter glycyrrhizin high producing strain19.775
DRR006523Root Summer glycyrrhizin low producing strain17.678
DRR006524Root Summer glycyrrhizin low producing strain17.058
DRR006525Leaf Summer glycyrrhizin high producing strain11.192
DRR006526Leaf Summer glycyrrhizin high producing strain11.104

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.885
SRR2868004Drought Stress(Tissue:root)20.579
SRR2967015Control (Tissue:root)21.573

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.134
SRR9715740Leave19.396
SRR9715741Leave20.825
SRR9715739Root11.206
SRR9715742Root23.544
SRR9715743Root18.815

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.277
SRR8749028MeJA induced 9h26.041
SRR8749029MeJA induced 9h27.500
SRR8749030Uninduced15.500
SRR8749031Uninduced13.048
SRR8749032Uninduced13.443

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.759
SRR8400027Control-Root21.830

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved