Gene detail information of Glyur002293s00025513.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16730.1 | 0 | glycosyl hydrolase family 35 protein |
| NR | AES74289.2 | 0 | glycoside hydrolase family 35 protein [Medicago truncatula] |
| COG | YP_008089223.1 | 4.00E-46 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| Swissprot | tr|Q9SCU9|BGA13_ARATH | 0 | Beta-galactosidase 13 (Precursor) |
| trEMBL | tr|G7J8I0|G7J8I0_MEDTR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02293 | 24765 | 29491 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002293s00025513.1 | PF01301.14 | Glyco_hydro_35 | 50 | 356 | 1.30E-112 |
| Glyur002293s00025513.1 | PF13364.1 | BetaGal_dom4_5 | 462 | 559 | 2.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.045 |
| SRR1783602 | moderate drought stress | 0.031 |
| SRR1811619 | moderate drought stress | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.044 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.044 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.091 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.771 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.178 |
| SRR2967015 | Control (Tissue:root) | 0.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.017 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.051 |
| SRR9715743 | Root | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.085 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.108 |
| SRR8400027 | Control-Root | 0.120 |