Gene detail information of Glyur002293s00025514.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38600.10HEAT repeat ;HECT-domain (ubiquitin-transferase)
NRKHN33674.10E3 ubiquitin-protein ligase UPL3 [Glycine soja]
Swissprottr|Q6WWW4|UPL3_ARATH0E3 ubiquitin-protein ligase UPL3
trEMBLtr|I1JSE2|I1JSE2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G00530.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold022933357143993-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10590TRIP12 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002293s00025514.3PF00632.20HECT157117715.20E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.764
SRR1783600control16.855
SRR1783602moderate drought stress22.891
SRR1811619moderate drought stress22.869

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.218
DRR006520Root Summer glycyrrhizin high producing strain23.455
DRR006521Root Winter glycyrrhizin high producing strain27.682
DRR006522Root Winter glycyrrhizin high producing strain26.915
DRR006523Root Summer glycyrrhizin low producing strain19.585
DRR006524Root Summer glycyrrhizin low producing strain19.364
DRR006525Leaf Summer glycyrrhizin high producing strain12.574
DRR006526Leaf Summer glycyrrhizin high producing strain12.686

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.168
SRR2868004Drought Stress(Tissue:root)58.098
SRR2967015Control (Tissue:root)63.949

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.761
SRR9715740Leave24.534
SRR9715741Leave28.829
SRR9715739Root9.590
SRR9715742Root43.394
SRR9715743Root38.637

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.245
SRR8749028MeJA induced 9h33.271
SRR8749029MeJA induced 9h19.900
SRR8749030Uninduced21.056
SRR8749031Uninduced26.404
SRR8749032Uninduced17.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.097
SRR8400027Control-Root46.913

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved