Gene detail information of Glyur002295s00035500.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16740.2 | 5.00E-36 | terpene synthase 03 |
| NR | KHN22857.1 | 4.08E-85 | Isoprene synthase, chloroplastic [Glycine soja] |
| Swissprot | tr|Q672F7|TPS2_LOTJA | 9.00E-85 | Tricyclene synthase EBOS, chloroplastic (Precursor) |
| trEMBL | tr|I1LRT2|I1LRT2_SOYBN | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G10990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02295 | 4824 | 8899 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12742 | ispS | EC:4.2.3.27 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002295s00035500.1 | PF01397.16 | Terpene_synth | 109 | 261 | 1.50E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.112 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.271 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.136 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.340 |
| SRR2967015 | Control (Tissue:root) | 0.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.843 |
| SRR9715740 | Leave | 3.118 |
| SRR9715741 | Leave | 8.539 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.123 |
| SRR9715743 | Root | 0.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.080 |
| SRR8400027 | Control-Root | 0.000 |