Gene detail information of Glyur002297s00042137.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 3.00E-100 | O-methyltransferase 1 |
| NR | XP_003528760.1 | 0 | PREDICTED: anthranilate N-methyltransferase [Glycine max] |
| COG | YP_007063273.1 | 1.00E-40 | hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|A9X7L0|ANMT_RUTGR | 5.00E-136 | Anthranilate N-methyltransferase |
| trEMBL | tr|V7AP24|V7AP24_PHAVU | 3.00E-163 | Uncharacterized protein {ECO:0000313|EMBL:ESW07324.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02297 | 24441 | 29480 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002297s00042137.1 | PF08100.6 | Dimerisation | 37 | 87 | 4.00E-16 |
| Glyur002297s00042137.1 | PF00891.13 | Methyltransf_2 | 107 | 345 | 2.40E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.777 |
| SRR1783600 | control | 22.808 |
| SRR1783602 | moderate drought stress | 0.918 |
| SRR1811619 | moderate drought stress | 1.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.983 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.432 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.418 |
| SRR2967015 | Control (Tissue:root) | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.244 |
| SRR9715740 | Leave | 5.200 |
| SRR9715741 | Leave | 9.729 |
| SRR9715739 | Root | 1.444 |
| SRR9715742 | Root | 0.375 |
| SRR9715743 | Root | 0.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.764 |
| SRR8400027 | Control-Root | 0.395 |