Gene detail information of Glyur002298s00031153.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12500.11.00E-89basic chitinase
NRAES74343.24.49E-154Chitinase (Class I) / Hevein [Medicago truncatula]
COGYP_001544943.12.00E-46chitinase [Herpetosiphon aurantiacus DSM 785]
Swissprottr|P06215|CHIT_PHAVU6.00E-150Endochitinase (Precursor)
trEMBLtr|G7J999|G7J999_MEDTR2.00E-154Chitinase (Class I) / Hevein {ECO:0000313|EMBL:AES74343.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0229812262839+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM18,GH19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20547CHIB EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520
MAPK signaling pathway - plantmap04016


Gene Ontology

biological_process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity

GO:0008061  chitin binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002298s00031153.1PF00187.14Chitin_bind_125641.70E-17
Glyur002298s00031153.1PF00182.14Glyco_hydro_19761278.60E-20
Glyur002298s00031153.1PF00182.14Glyco_hydro_191282726.20E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.987
SRR1783600control3.065
SRR1783602moderate drought stress10.323
SRR1811619moderate drought stress10.630

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.644
DRR006520Root Summer glycyrrhizin high producing strain2.439
DRR006521Root Winter glycyrrhizin high producing strain12.240
DRR006522Root Winter glycyrrhizin high producing strain12.744
DRR006523Root Summer glycyrrhizin low producing strain0.361
DRR006524Root Summer glycyrrhizin low producing strain0.605
DRR006525Leaf Summer glycyrrhizin high producing strain253.116
DRR006526Leaf Summer glycyrrhizin high producing strain258.387

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)194.396
SRR2868004Drought Stress(Tissue:root)206.937
SRR2967015Control (Tissue:root)214.212

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave457.862
SRR9715740Leave146.056
SRR9715741Leave300.170
SRR9715739Root53.516
SRR9715742Root57.345
SRR9715743Root54.352

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.217
SRR8749028MeJA induced 9h272.165
SRR8749029MeJA induced 9h100.514
SRR8749030Uninduced179.080
SRR8749031Uninduced141.752
SRR8749032Uninduced205.065

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root154.707
SRR8400027Control-Root77.296

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved