Gene detail information of Glyur002298s00031155.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22800.10Alanyl-tRNA synthetase, class IIc
NRXP_007137313.10hypothetical protein PHAVU_009G116900g [Phaseolus vulgaris]
COGYP_001657574.10alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
Swissprottr|B9HQZ6|SYAP_POPTR0Probable alanine--tRNA ligase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03134}
trEMBLtr|V7AUH7|V7AUH7_PHAVU0Probable alanine--tRNA ligase, chloroplastic {ECO:0000256|HAMAP-Rule:MF_03134}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02298451810891-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01872AARS, alaS EC:6.1.1.7 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006419  alanyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm

GO:0009507  chloroplast


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004813  alanine-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002298s00031155.1PF01411.14tRNA-synt_2c936551.60E-188
Glyur002298s00031155.1PF07973.9tRNA_SAD7547977.20E-18
Glyur002298s00031155.1PF02272.14DHHA19069758.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.948
SRR1783600control1.987
SRR1783602moderate drought stress2.482
SRR1811619moderate drought stress2.565

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.734
DRR006520Root Summer glycyrrhizin high producing strain2.743
DRR006521Root Winter glycyrrhizin high producing strain3.136
DRR006522Root Winter glycyrrhizin high producing strain3.101
DRR006523Root Summer glycyrrhizin low producing strain3.076
DRR006524Root Summer glycyrrhizin low producing strain3.040
DRR006525Leaf Summer glycyrrhizin high producing strain49.979
DRR006526Leaf Summer glycyrrhizin high producing strain49.675

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.886
SRR2868004Drought Stress(Tissue:root)6.891
SRR2967015Control (Tissue:root)7.712

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.123
SRR9715740Leave68.802
SRR9715741Leave42.263
SRR9715739Root0.396
SRR9715742Root3.176
SRR9715743Root2.620

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.230
SRR8749028MeJA induced 9h9.652
SRR8749029MeJA induced 9h5.434
SRR8749030Uninduced3.457
SRR8749031Uninduced4.355
SRR8749032Uninduced3.533

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.942
SRR8400027Control-Root7.183

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved