Gene detail information of Glyur002298s00031160.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19260.1 | 2.00E-26 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004500707.1 | 0 | PREDICTED: uncharacterized protein LOC101488765 [Cicer arietinum] |
| Swissprot | tr|Q9SGH2|MBD9_ARATH | 1.00E-07 | Methyl-CpG-binding domain-containing protein 9 |
| trEMBL | tr|G7J542|G7J542_MEDTR | 0 | PHD-finger protein {ECO:0000313|EMBL:AES73167.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02298 | 25122 | 34433 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002298s00031160.2 | PF00628.24 | PHD | 262 | 307 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.424 |
| SRR1783600 | control | 4.468 |
| SRR1783602 | moderate drought stress | 5.780 |
| SRR1811619 | moderate drought stress | 5.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.770 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.634 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.938 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.633 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.424 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.461 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.977 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.264 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.188 |
| SRR2967015 | Control (Tissue:root) | 6.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.493 |
| SRR9715740 | Leave | 5.416 |
| SRR9715741 | Leave | 4.938 |
| SRR9715739 | Root | 0.886 |
| SRR9715742 | Root | 5.309 |
| SRR9715743 | Root | 4.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.797 |
| SRR8749028 | MeJA induced 9h | 7.482 |
| SRR8749029 | MeJA induced 9h | 6.658 |
| SRR8749030 | Uninduced | 6.290 |
| SRR8749031 | Uninduced | 4.470 |
| SRR8749032 | Uninduced | 3.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.889 |
| SRR8400027 | Control-Root | 7.503 |