Gene detail information of Glyur002299s00036267.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20710.1 | 0 | beta-galactosidase 7 |
| NR | XP_003595331.1 | 0 | Beta-galactosidase [Medicago truncatula] |
| COG | YP_003160083.1 | 3.00E-27 | beta-galactosidase [Jonesia denitrificans DSM 20603] |
| Swissprot | tr|Q9SCV5|BGAL7_ARATH | 0 | Beta-galactosidase 7 (Precursor) |
| trEMBL | tr|G7IIN1|G7IIN1_MEDTR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02299 | 39736 | 44082 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002299s00036267.1 | PF01301.14 | Glyco_hydro_35 | 46 | 264 | 6.30E-70 |
| Glyur002299s00036267.1 | PF02140.13 | Gal_Lectin | 662 | 739 | 5.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.791 |
| SRR1783600 | control | 1.812 |
| SRR1783602 | moderate drought stress | 5.535 |
| SRR1811619 | moderate drought stress | 5.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.316 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.169 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.832 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.318 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.737 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.449 |
| SRR2967015 | Control (Tissue:root) | 6.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.311 |
| SRR9715740 | Leave | 0.580 |
| SRR9715741 | Leave | 14.875 |
| SRR9715739 | Root | 0.308 |
| SRR9715742 | Root | 7.020 |
| SRR9715743 | Root | 4.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.721 |
| SRR8749028 | MeJA induced 9h | 15.060 |
| SRR8749029 | MeJA induced 9h | 14.096 |
| SRR8749030 | Uninduced | 22.150 |
| SRR8749031 | Uninduced | 24.752 |
| SRR8749032 | Uninduced | 26.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.189 |
| SRR8400027 | Control-Root | 3.147 |