Gene detail

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Gene detail information of Glyur002300s00037640.2

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G51770.2	tetratricopeptide repeat (TPR)-containing protein
NR	XP_004506795.1	PREDICTED: ethylene-overproduction protein 1-like [Cicer arietinum]
Swissprot	tr\|O65020\|ETO1_ARATH	Ethylene-overproduction protein 1
trEMBL	tr\|I1J7G9\|I1J7G9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G31170.1}

Sequence

Transcript Sequence

>Glyur002300s00037640.2
ATTTTATTATTTTGCATTCAACTCAGGTAAAGAGAGGAAAAAGAGAAGATGCAGCACAACATCTTCACCACAATGCGTAGCATGAAGATCATGGACGGTTGCAAGGGAACTCAGGTCTACGCCATCCACCCCTCCTCCGGCACCGGCNCCGGTGGTGGTGGCGGCGGCATCGGAGAGAAGCTTCTTCAGCAAATCCACGACCACATAAAAAGCCAAACCCTTCGTTCCAAATCGGTTCGGCACTTCCAACAACCTCCGAACCCGACACACTCCTCCGAGGTTTCCCTTGTCGCCGAGGGCTCTCTCCTCCCTTATGGGCTTCCCATGACGGACCTCCTTGAGCCCAAGATCGAGCCCACTTTGAGGCCCGTTGATTTCGTCGAAACACTCTCCCGCGTCCACCGTAGAGTCGAGGAATGCCCCCAATTCGACAGGTCCGAGGTATACCTGGAGCAGTGCTCCGTGTTCCGCGGGCTATCCGACCCGAAATTGTTCCGGCGGAGCCTTCGTTCCGCCAGACAGCACGCGGTTGANGTGCACACGAAGGTCGTGCTCGCCTCGTGGCTCCGGTATGAGCGGAGGGAGGACGAGCTCATTGGCTCGTCCTCCATGGATTGTTGTGGAAGGAACATTGAATGCCCCAGGGCTACCTTGTCCCCTGGGTATGACCCCGAGTCGGTTTATGATCCTTGTTCTTGCGCGTGCTCTCGCAATANCGGTAATTCCAATAGCGAAGAGGCTTTGACGACGACGGTGGTTGCTGAGGAGGAGCAATGCTCTACCTCCTCGGAAGAGGAGGATGATGATGTTGATGGTGACATGTCGTTTTGCATTGGTGACAGTGAAATTAGATGTAGTAGATTCAATATTGCCTCGCTTTCGAGGCCGTTTAAGACAATGCTGTATGGTGGATTCATAGAATCGAGGAGGGAGAAGATAAATTTTTCGCGGAATGGGTTCTCTGTTGAGGTAATGAGGGCCGCGGAGGTGTTTAGTAGGACTAAAAGGTTGAGCCAGTTTCAGCCTGATGTTGTTTTGGAGTTGTTGTCTCTGGCGAACCGGTTTTGTTGCGAGGAGATGAAGTCCGCTTGTGATGCGCATTTGGCGTCTCTGGTTTGTGACTTGGACGATGCCTTGTTGCTCATTGAGTATGGACTGGAGGAGACCGCGTACCTTCTGGTTGCCGCTTGCTTGCAGGTGTTTCTGAGGGAGCTCCCCGGTTCGATGCAGTGTTCCGGTTTCGTGAAAATGTTTTGTAGTCCAGAGGGTAGGGATAGGCTGGCCATGGCGGGGCACGCGTCGTTTGTGTTGTATTATTTCTTGAGCCAGGTTGCTATGGAGGATGAGATGAGGTCTAACACGACCGTCATGCTGTTGGAGAGGTTAGTAGAGTGCGCAGCGGATGGCTGGGAGAAGCAACTAGCGTTTCACCTGCTAGGTGTTGTTATGCTTGAGAGAAAAGAATACAAAGATGCACAGCATTGGTTTGAGGCAGCAGTGGAGGCAGGGCATGTTTATTCTTTAGTGGGAGTTGCAAGGGCCAAATATAAACGCGGCCATACATATTCGGCATATAAGCTGATGAACTCGCTTATTTCTGATTATATACCTGTTGGCTGGATGTATCAGGAGAGATCTCTGTATTGTCTTGGGAAGGAGAAAATGAGGGACTTGATCTCCGCAACAGAATTAGATCCGACTCTTTCGTTTCCTTACAAACACCGGGCTGTTTCTTTGCTGGAGGAGAACAAGATTGGACCTGCCATTGCAGAAATAAATAAAATAATCGGTTTCAAGGTTTCTCCAGATTGCCTTGAATTGAGAGCTTGGTTGTTGATTGCCATGGAGGATTATGAAGGGGCCCTCAGGGATGTCCGGGCAATTTTAACATTGGACCCAAATTACATGATGTTCTATGGGAATATGCATGGTGATCACTTGGTAGAACTACTCAGCCCTGTTGTTCAGCAGTGGAGTCAAGCTGATTGCTGGATGCAATTGTATGACCGGTGGTCTTCTGTTGATGATATCGGTTCTTTGGCCGTTGTACACCAGATGTTAGAAAATGATCCAGGGAAAAGTCTTCTACGCTTTCGGCAATCTCTCCTCCTGTTACGGCTAAATTGTCAGAAGGCAGCCATGCGTAGTTTGCGGCTGGCCAGAAATCATTCTACTTCTGACCATGAAAGGCTTGTCTATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCATTAGCAAAGGCCGAGGAGTCCATTTCCCTTCAAAGATCATTTGAAGCTTACTTTCTCAAAGCTTACGCATTAGCCGACACAAGCCTTGATTCTGAGTCTTCAAAGTACGTGATCCATCTCTTGGAGGAAGCTCTTAGATGTCCTTCAGACGGTCTTCGGAAAGGACAAGCCCTAAATAACCTAGGGAGTGTCTACGTAGATTGTGATAAGCTNGACCTTGCAGCTGACTGCTACATGAATGCACTCANNATCAAGCANACACGAGCACACCAGGGGNTGGCACGTGTATATCATCTTAAAAATCACCGCAAAGCTGCATATGATGAGATGACACAACTAATAGAAAAGGCTCGGAATAATGCATCGGCTTATGAGAAACGTTCAGAGTATTGTGATCGTGACATGGCAAAGAGTGATCTCAGTATGGCAACACAGTTGGATCCTCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGACGATCACAAGGAAGCTGAAGCNATTGAAGAGCTTTCAAGAGCGATTGATTTTAAGCCAGATCTGCAACTGTTACATCTTCGAGCAGCCTTTTACGATTCAATGAGTGATTATGTTTCTACTGTCCGAGACTGTGAAGCAGCCCTCTGTCTTGATCCTAGCCATTCCGAGACGCTTGAGCTTTGTAATAAAGCACGGGAGCGGCTTAAGGAACAAAAGTGAGAGCGAATCGGAGATTAGAAAAGAATCCATGTTTTCTGAGTGTTCCCTGTGGTGGGGACAAGCCTATTCTTGCCACCAACCTGTACTTTTTTATAAACATGAAGGTCCAGTAATCATCACTGCTATAAATCTGTTATCTTTTGTCTCCAGCAAAAGGTATGNTATGGTCTATATCTTTCAGCTGGCGCTTCCGGAATCGGAACTACAGAAAGGAAAAGAAAAATTAGAAAGCATTTTGGATTGGAACAGAAGGGAAAGCAGAGGAGCAGGATAGCTTGTAAATATATGTAATGTAATGTAATGGCTTGTGTTTTTGTCAGAGGATATGGTCAAGTAGTGCAGACAGCTAGCTGCAGCTGCTATGCTCCAATGGTGAGGAGTTCCCAGTTAGACAAAACATGTACATGAATAATCAATTTATGTAAGTCCAAGATTTAGATATTTACCATTGTATTTTTGGCTGAGCAATTGCAATTCACCATTGTGTTGTAACATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02300	30593	36760	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002300s00037640.2	PF07719.12	TPR_2	587	619	0.021
Glyur002300s00037640.2	PF00515.23	TPR_1	787	815	0.003

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.568
SRR1783600	control	28.623
SRR1783602	moderate drought stress	31.055
SRR1811619	moderate drought stress	30.418

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.953
DRR006520	Root Summer glycyrrhizin high producing strain	23.350
DRR006521	Root Winter glycyrrhizin high producing strain	11.701
DRR006522	Root Winter glycyrrhizin high producing strain	11.162
DRR006523	Root Summer glycyrrhizin low producing strain	24.205
DRR006524	Root Summer glycyrrhizin low producing strain	24.423
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.747

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.991
SRR2868004	Drought Stress(Tissue:root)	17.455
SRR2967015	Control (Tissue:root)	18.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.491
SRR9715740	Leave	7.089
SRR9715741	Leave	5.769
SRR9715739	Root	6.076
SRR9715742	Root	13.384
SRR9715743	Root	13.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.443
SRR8749028	MeJA induced 9h	18.483
SRR8749029	MeJA induced 9h	18.342
SRR8749030	Uninduced	7.598
SRR8749031	Uninduced	9.322
SRR8749032	Uninduced	10.390

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	27.836
SRR8400027	Control-Root	24.273