Gene detail information of Glyur002301s00034227.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G35390.20Phosphoribosyltransferase family protein
NRAES90848.20ribose-phosphate pyrophosphokinase [Medicago truncatula]
COGYP_007065273.16.00E-169ribose-phosphate pyrophosphokinase [Calothrix sp. PCC 7507]
Swissprottr|Q42581|KPRS1_ARATH0Ribose-phosphate pyrophosphokinase 1, chloroplastic (Precursor)
trEMBLtr|G7JHM7|G7JHM7_MEDTR0Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:AES90848.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold023011997124579+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00948PRPS, prsA EC:2.7.6.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Purine metabolismmap00230


Gene Ontology

biological_process

GO:0009156  ribonucleoside monophosphate biosynthetic process

GO:0009165  nucleotide biosynthetic process

GO:0044249  cellular biosynthetic process


molecular_function

GO:0000287  magnesium ion binding

GO:0004749  ribose phosphate diphosphokinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002301s00034227.1PF13793.1Pribosyltran_N992083.20E-40
Glyur002301s00034227.1PF14572.1Pribosyl_synth2944015.40E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.707
SRR1783600control11.776
SRR1783602moderate drought stress9.871
SRR1811619moderate drought stress10.076

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.841
DRR006520Root Summer glycyrrhizin high producing strain9.788
DRR006521Root Winter glycyrrhizin high producing strain1.076
DRR006522Root Winter glycyrrhizin high producing strain1.121
DRR006523Root Summer glycyrrhizin low producing strain8.887
DRR006524Root Summer glycyrrhizin low producing strain8.647
DRR006525Leaf Summer glycyrrhizin high producing strain14.626
DRR006526Leaf Summer glycyrrhizin high producing strain14.674

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.129
SRR2868004Drought Stress(Tissue:root)13.874
SRR2967015Control (Tissue:root)10.654

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.909
SRR9715740Leave7.286
SRR9715741Leave7.628
SRR9715739Root5.742
SRR9715742Root13.654
SRR9715743Root12.408

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.883
SRR8749028MeJA induced 9h20.745
SRR8749029MeJA induced 9h17.667
SRR8749030Uninduced14.744
SRR8749031Uninduced7.425
SRR8749032Uninduced6.738

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.991
SRR8400027Control-Root14.081

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved