Gene detail information of Glyur002302s00044680.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21200.1 | 3.00E-43 | gibberellin 2-oxidase 8 |
| NR | XP_007157175.1 | 1.74E-75 | hypothetical protein PHAVU_002G049000g [Phaseolus vulgaris] |
| COG | YP_007877109.1 | 1.00E-08 | putative oxidoreductase [Raoultella ornithinolytica B6] |
| Swissprot | tr|O49561|G2OX8_ARATH | 7.00E-52 | Gibberellin 2-beta-dioxygenase 8 |
| trEMBL | tr|V7CGD1|V7CGD1_PHAVU | 7.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:ESW29169.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02302 | 31239 | 36459 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04125 | E1.14.11.13 | EC:1.14.11.13 | Diterpenoid biosynthesis | map00904 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002302s00044680.1 | PF14226.1 | DIOX_N | 49 | 147 | 6.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.877 |
| SRR1783600 | control | 8.029 |
| SRR1783602 | moderate drought stress | 3.788 |
| SRR1811619 | moderate drought stress | 3.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.193 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.161 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.308 |
| SRR2967015 | Control (Tissue:root) | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.726 |
| SRR9715740 | Leave | 0.393 |
| SRR9715741 | Leave | 0.053 |
| SRR9715739 | Root | 1.595 |
| SRR9715742 | Root | 2.164 |
| SRR9715743 | Root | 1.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.069 |
| SRR8400027 | Control-Root | 15.129 |