Gene detail information of Glyur002305s00040660.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G51970.24.00E-81GroES-like zinc-binding alcohol dehydrogenase family protein
NRXP_003636745.11.63E-108L-idonate 5-dehydrogenase [Medicago truncatula]
COGYP_001103186.16.00E-37zinc-binding dehydrogenase [Saccharopolyspora erythraea NRRL 2338]
Swissprottr|Q9FJ95|DHSO_ARATH5.00E-99Sorbitol dehydrogenase
trEMBLtr|G7ZXE5|G7ZXE5_MEDTR6.00E-109L-idonate 5-dehydrogenase {ECO:0000313|EMBL:AES83883.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold023053170639400+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00008SORD, gutB EC:1.1.1.14 Pentose and glucuronate interconversions map00040
Fructose and mannose metabolismmap00051


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002305s00040660.1PF00107.21ADH_zinc_N1172041.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.319
SRR1783600control53.570
SRR1783602moderate drought stress127.305
SRR1811619moderate drought stress124.229

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.981
DRR006520Root Summer glycyrrhizin high producing strain47.420
DRR006521Root Winter glycyrrhizin high producing strain162.592
DRR006522Root Winter glycyrrhizin high producing strain160.251
DRR006523Root Summer glycyrrhizin low producing strain74.743
DRR006524Root Summer glycyrrhizin low producing strain75.323
DRR006525Leaf Summer glycyrrhizin high producing strain56.290
DRR006526Leaf Summer glycyrrhizin high producing strain55.380

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.520
SRR2868004Drought Stress(Tissue:root)57.655
SRR2967015Control (Tissue:root)51.839

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave122.644
SRR9715740Leave152.231
SRR9715741Leave168.787
SRR9715739Root12.019
SRR9715742Root31.060
SRR9715743Root26.029

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.670
SRR8749028MeJA induced 9h46.947
SRR8749029MeJA induced 9h31.548
SRR8749030Uninduced67.828
SRR8749031Uninduced55.189
SRR8749032Uninduced58.334

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.675
SRR8400027Control-Root41.122

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved