Gene detail information of Glyur002310s00039389.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44990.1 | 0 | carotenoid cleavage dioxygenase 7 |
| NR | ADM88552.1 | 0 | CCD7-like protein [Lotus japonicus] |
| COG | YP_005068641.1 | 1.00E-44 | lignostilbene-alpha,beta-dioxygenase [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q7XJM2|CCD7_ARATH | 0 | Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor) |
| trEMBL | tr|H6S0L9|H6S0L9_LOTJA | 0 | CCD7-like protein {ECO:0000313|EMBL:ADM88552.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02310 | 16043 | 27325 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K17912 | CCD7 | EC:1.13.11.68 | Carotenoid biosynthesis | map00906 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002310s00039389.1 | PF03055.10 | RPE65 | 79 | 624 | 1.10E-98 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.115 |
| SRR1783600 | control | 4.106 |
| SRR1783602 | moderate drought stress | 0.655 |
| SRR1811619 | moderate drought stress | 0.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.162 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.480 |
| SRR2967015 | Control (Tissue:root) | 11.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.315 |
| SRR9715742 | Root | 0.631 |
| SRR9715743 | Root | 0.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.382 |
| SRR8400027 | Control-Root | 2.636 |