Gene detail

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Gene detail information of Glyur002310s00039389.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44990.1	0	carotenoid cleavage dioxygenase 7
NR	ADM88552.1	0	CCD7-like protein [Lotus japonicus]
COG	YP_005068641.1	1.00E-44	lignostilbene-alpha,beta-dioxygenase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q7XJM2\|CCD7_ARATH	0	Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor)
trEMBL	tr\|H6S0L9\|H6S0L9_LOTJA	0	CCD7-like protein {ECO:0000313\|EMBL:ADM88552.1}

Sequence

Transcript Sequence

>Glyur002310s00039389.2
CTCTTCACAAAATGCAAGCCAAAGCTATCCACAACACCCCAACACACATTAATATTCCTCTTCCAATAAGACCTCCTCCGGTGCACCAAGCCTCCTTACCCCTACCAACCAAACTTCGTGCAATATCCATACCCGTACCCAGTACCGATGTGGTGGTTCCGGTTCCAGTTTGGGTTCCAGATCCGGTACCACCATCTATTGAACTCGATGACTCCATAGCCGCCCCATGGGATTACCAATTCCTGTTTATGTCCCAACGATTGGAAACTGCTCAACCGGTCGCCCTACGCATCGTGGACGGTGCAATACCGGCCGATTTTCCGTCCGGCACGTACTATTTAACTGGGCCGGGGATTCTCACGGACGATCATGGATCCACGGTGCACCCACTAGATGGCCATGGGTACTTAAGGGCCTTCACATTTGATAATGTGACTAAGGAAGTGAAATACATGGCTAAGTACATTAAGACGGAGGCTCAATTGGAGGAGCATGACCCAAAGACCGACACGTGGAGGTTTACCCATAGGGGACCATTTTCGGTATTGAAGGGTGGGAAAAGGATTGGGAACACTAAGGTCATGAAAAATGTGGCCAACACTAGTGTGTTGATGTGGGGGGAGAAGCTCCTGTGTATGTGGGAAGGTGGGGATCCATATGAGATTCAATCTGGTACGTTGGATACGATCGGGAAGTTCAACATGATGGACGGTTGTGATTTGGAACATCGTGATGATGAGAATCACCACGGTGGTGGTCGTGATATTTGGGAGGTTGCTGCCAGCGTACTGAAGCCTATATTGTATGGAATTTTTAAGATGCCCCCAAAGAGGCTCTTGTCTCATTATAAGGTTGATTCTAGCAGGGGTAGGCTACTCACTGTGTCATGCAATGCAGAAGACATGTTGCTTCCACGCAGTAATTTTACATTTAGTGAATATGACTCTAATTTCAGGTTAGTACAAAAGCAAGACTTCCAAATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACGGATACCCACTACATTGTGTTCGCCAATCGCATAAAACTTGATTTACTAGGATCAATGGCAGCAGTATGTGGGACATCTCCAATGATATCGGCATTAACAGTAAACCCAAGTAAGAACACATCGCCAGTATACTTGCTTCCTCGGTTTCCAGACAAAGCTGAAGAAGGCAAAAAGAGAGACTGGAGAATGCCAGTTGAAGCACCTTCACAACTGTGGTTGCTCCATGTTGGCAATGCCTTTGAAGATACAACTGGCGAACACAGAAGCTAGATCCATCAATCATGAATGTAAAAGGTGAAAATGAGTTATTGCCCCATCTTGTTCAGGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02310	16043	27325	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17912	CCD7	EC:1.13.11.68	Carotenoid biosynthesis	map00906

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002310s00039389.2	PF03055.10	RPE65	79	420	5.80E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.115
SRR1783600	control	4.106
SRR1783602	moderate drought stress	0.655
SRR1811619	moderate drought stress	0.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.209
DRR006520	Root Summer glycyrrhizin high producing strain	10.160
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	10.990
DRR006524	Root Summer glycyrrhizin low producing strain	10.908
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	24.162
SRR2868004	Drought Stress(Tissue:root)	17.480
SRR2967015	Control (Tissue:root)	11.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.315
SRR9715742	Root	0.631
SRR9715743	Root	0.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.382
SRR8400027	Control-Root	2.636