Gene detail information of Glyur002317s00041399.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47570.10Leucine-rich repeat protein kinase family protein
NRXP_007141779.10hypothetical protein PHAVU_008G225000g [Phaseolus vulgaris]
COGYP_004775215.12.00E-54RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprottr|C0LGP4|Y3475_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBLtr|V7BA90|V7BA90_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW13773.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0231729196386+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.12.4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002317s00041399.1PF08263.7LRRNT_230682.00E-08
Glyur002317s00041399.1PF12799.2LRR_41211582.10E-06
Glyur002317s00041399.1PF13855.1LRR_84665262.60E-09
Glyur002317s00041399.1PF00560.28LRR_15635850.04
Glyur002317s00041399.1PF00069.20Pkinase7078648.40E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.064
SRR1783600control0.012
SRR1783602moderate drought stress0.012
SRR1811619moderate drought stress0.003

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.104
DRR006520Root Summer glycyrrhizin high producing strain0.214
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.130
DRR006524Root Summer glycyrrhizin low producing strain0.067
DRR006525Leaf Summer glycyrrhizin high producing strain0.609
DRR006526Leaf Summer glycyrrhizin high producing strain0.575

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.028
SRR2868004Drought Stress(Tissue:root)0.020
SRR2967015Control (Tissue:root)0.026

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.401
SRR9715740Leave0.176
SRR9715741Leave0.622
SRR9715739Root0.000
SRR9715742Root0.251
SRR9715743Root0.128

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.024
SRR8749028MeJA induced 9h0.092
SRR8749029MeJA induced 9h0.166
SRR8749030Uninduced0.098
SRR8749031Uninduced0.012
SRR8749032Uninduced0.084

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.036
SRR8400027Control-Root0.024

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved