Gene detail

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Gene detail information of Glyur002330s00040000.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59250.1	2.00E-10	F-box/RNI-like superfamily protein
NR	XP_006601071.1	1.41E-74	PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Glycine max]
Swissprot	tr\|Q9LX46\|FBL68_ARATH	5.00E-11	F-box/LRR-repeat protein At3g59250
trEMBL	tr\|K7MMN5\|K7MMN5_SOYBN	2.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G27890.1}

Sequence

Transcript Sequence

>Glyur002330s00040000.1
ATGGAGTCTGGTTTAACTGTTACTACTGGCTCTGGCAAACGAAAGGAAGAGCCTCATAAGAAAGAGAAGGCAAATGAAGGTGAGGACATAATTAGCAACCTACCCGAATCACTTATCAGTCGTATTCTCTCTTTTCTCCCAACAACTGAAGATGCAGTTCTTACGAGTGTGTTATCCAAGAGATGGATATACCTCTGGACAACCACCAACAAGCTGGTCTTAGATGACAGTGTGTACCATCCTCCCATCAAGAAAGTAGGTGGAACTTGGTTCCTTACATTATCCGTTCTATTATCGCAACCGGAGAAGGAGAAGAGCTGGAGATCAGCAGCACTTCAAGAATTGTTACTGATGACATATGGCAATGAAATAAAGATTCCCACCACCCATGTTCATTTTGGGTACCTAAAATCCCTCACGTTCTCTGGAATTGATTTTACCGTTGACTCCTCCGATGACCATTTGAGTCTTAGTTTACTAGTCCTCAAAAAGTTTAAGACAGTCAACTGCACTTGGATAAATGCAAAGGGCATCACTGTAGAAGCGCCTTTACTTGAAACCATTTGCATAGAACAAAATCTTGATTCGGCATCTGATGAGCTGTGTAGCAGTGCAATCACATTTTCTGTGTTGCATCTGAAAGANCTNNCCTATTNTGGTTANGATATATCACGAACTTTACTTCACGTCATGCAGGTTCTGACACAACTAGAATTGGCTATTCTGCCTGTATTTGCAAAGTTAAGCCATTTGGAGATTGGCTGGGTTACTAGTGAAGTTTTGTTAGGCTTACTTCAAAAGTCACCGTTCTTAATACTCTCAAGTCTTATTTGGACATTTTTAATAATTAATCATCAGGGAATATCTAAATTTGACCAAGATCATCTTTCCAATTCTAGTGCTGTGCCCGAATGTTTGCCGTATACTTTCCAGGTTGTGAAATTTGAAGAAATTGATGGAGACTACCATGAGCTGTTTTTAGCTAAATATTTTATGGAAAATGGTATGGTGCTGAAAAGGATGAGTTTCTCCCGTTTTAGCGAATCTAAGGTTATGGGGGAATTTAAGGAGAAGATCTTCTCATTCAAAAAAGCTTTCTCTAATTTTGCTATTGTTCATTTTCCAATATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02330	12936	14850	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002330s00040000.1	PF08387.5	FBD	298	344	3.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.990
SRR1783600	control	0.673
SRR1783602	moderate drought stress	1.225
SRR1811619	moderate drought stress	0.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.472
DRR006520	Root Summer glycyrrhizin high producing strain	0.379
DRR006521	Root Winter glycyrrhizin high producing strain	0.542
DRR006522	Root Winter glycyrrhizin high producing strain	0.514
DRR006523	Root Summer glycyrrhizin low producing strain	1.630
DRR006524	Root Summer glycyrrhizin low producing strain	0.811
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.748
SRR2868004	Drought Stress(Tissue:root)	1.732
SRR2967015	Control (Tissue:root)	1.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.465
SRR9715740	Leave	0.501
SRR9715741	Leave	0.232
SRR9715739	Root	0.882
SRR9715742	Root	0.260
SRR9715743	Root	0.855

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.503
SRR8749028	MeJA induced 9h	3.103
SRR8749029	MeJA induced 9h	1.848
SRR8749030	Uninduced	2.231
SRR8749031	Uninduced	1.888
SRR8749032	Uninduced	1.188

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.795
SRR8400027	Control-Root	2.393