Gene detail information of Glyur002339s00035632.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53130.10Cytochrome P450 superfamily protein
NRXP_004516958.10PREDICTED: carotene epsilon-monooxygenase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_630524.19.00E-55cytochrome P450 family protein [Myxococcus xanthus DK 1622]
Swissprottr|Q6TBX7|LUT1_ARATH0Carotene epsilon-monooxygenase, chloroplastic (Precursor)
trEMBLtr|I1L941|I1L941_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G07210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold023391706327051+


Gene family

Gene familysubfamily
Cytochrome P450 FamilyCYP97C1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09837LUT1, CYP97C1 EC:1.14.99.45 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037  heme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002339s00035632.1PF00067.17p4501085052.40E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.612
SRR1783600control5.553
SRR1783602moderate drought stress6.208
SRR1811619moderate drought stress6.105

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.277
DRR006520Root Summer glycyrrhizin high producing strain3.284
DRR006521Root Winter glycyrrhizin high producing strain1.210
DRR006522Root Winter glycyrrhizin high producing strain1.206
DRR006523Root Summer glycyrrhizin low producing strain3.801
DRR006524Root Summer glycyrrhizin low producing strain3.834
DRR006525Leaf Summer glycyrrhizin high producing strain25.934
DRR006526Leaf Summer glycyrrhizin high producing strain26.152

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.153
SRR2868004Drought Stress(Tissue:root)5.377
SRR2967015Control (Tissue:root)4.945

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.437
SRR9715740Leave14.181
SRR9715741Leave6.082
SRR9715739Root1.240
SRR9715742Root1.994
SRR9715743Root1.974

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.666
SRR8749028MeJA induced 9h8.232
SRR8749029MeJA induced 9h7.674
SRR8749030Uninduced1.414
SRR8749031Uninduced0.335
SRR8749032Uninduced1.547

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.863
SRR8400027Control-Root4.346