Gene detail information of Glyur002339s00035632.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G53130.1 | 0 | Cytochrome P450 superfamily protein |
NR | XP_004516958.1 | 0 | PREDICTED: carotene epsilon-monooxygenase, chloroplastic-like isoform X1 [Cicer arietinum] |
COG | YP_630524.1 | 9.00E-55 | cytochrome P450 family protein [Myxococcus xanthus DK 1622] |
Swissprot | tr|Q6TBX7|LUT1_ARATH | 0 | Carotene epsilon-monooxygenase, chloroplastic (Precursor) |
trEMBL | tr|I1L941|I1L941_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G07210.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02339 | 17063 | 27051 | + |
Gene family
Gene family | subfamily |
---|---|
Cytochrome P450 Family | CYP97C1 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K09837 | LUT1, CYP97C1 | EC:1.14.99.45 | Carotenoid biosynthesis | map00906 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002339s00035632.1 | PF00067.17 | p450 | 108 | 505 | 2.40E-72 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 5.612 |
SRR1783600 | control | 5.553 |
SRR1783602 | moderate drought stress | 6.208 |
SRR1811619 | moderate drought stress | 6.105 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 3.277 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 3.284 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.210 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.206 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 3.801 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 3.834 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.934 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.152 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 6.153 |
SRR2868004 | Drought Stress(Tissue:root) | 5.377 |
SRR2967015 | Control (Tissue:root) | 4.945 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 8.437 |
SRR9715740 | Leave | 14.181 |
SRR9715741 | Leave | 6.082 |
SRR9715739 | Root | 1.240 |
SRR9715742 | Root | 1.994 |
SRR9715743 | Root | 1.974 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 9.666 |
SRR8749028 | MeJA induced 9h | 8.232 |
SRR8749029 | MeJA induced 9h | 7.674 |
SRR8749030 | Uninduced | 1.414 |
SRR8749031 | Uninduced | 0.335 |
SRR8749032 | Uninduced | 1.547 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 5.863 |
SRR8400027 | Control-Root | 4.346 |