Gene detail information of Glyur002347s00039122.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71760.1 | 7.00E-32 | |
| NR | XP_006574776.1 | 3.83E-79 | PREDICTED: uncharacterized protein LOC100799512 isoform X2 [Glycine max] |
| trEMBL | tr|K7K702|K7K702_SOYBN | 2.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G08491.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02347 | 25085 | 27643 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.772 |
| SRR1783600 | control | 4.441 |
| SRR1783602 | moderate drought stress | 0.493 |
| SRR1811619 | moderate drought stress | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.793 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.653 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.616 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.398 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.283 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.099 |
| SRR2967015 | Control (Tissue:root) | 1.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.582 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.228 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.952 |
| SRR8749028 | MeJA induced 9h | 1.407 |
| SRR8749029 | MeJA induced 9h | 1.391 |
| SRR8749030 | Uninduced | 0.409 |
| SRR8749031 | Uninduced | 0.516 |
| SRR8749032 | Uninduced | 0.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.445 |
| SRR8400027 | Control-Root | 0.741 |