Gene detail information of Glyur002353s00034535.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67320.10WD-40 repeat family protein
NRXP_004509095.10PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cicer arietinum]
COGYP_001865069.13.00E-53hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprottr|Q3Y8L7|DAW1_CHLRE1.00E-25Dynein assembly factor with WDR repeat domains 1
trEMBLtr|A0A072UNV5|A0A072UNV5_MEDTR0F-box-like/WD repeat TBL1XR1-like protein {ECO:0000313|EMBL:KEH31514.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02353867723968+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002353s00034535.1PF08513.6LisH8337.90E-08
Glyur002353s00034535.1PF00400.27WD402302644.00E-12
Glyur002353s00034535.1PF00400.27WD402973232.20E-05
Glyur002353s00034535.1PF00400.27WD403273652.70E-08
Glyur002353s00034535.1PF00400.27WD404124482.30E-11
Glyur002353s00034535.1PF00400.27WD404534991.40E-08
Glyur002353s00034535.1PF00400.27WD405035419.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.182
SRR1783600control17.192
SRR1783602moderate drought stress21.757
SRR1811619moderate drought stress21.538

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.368
DRR006520Root Summer glycyrrhizin high producing strain24.347
DRR006521Root Winter glycyrrhizin high producing strain31.157
DRR006522Root Winter glycyrrhizin high producing strain29.829
DRR006523Root Summer glycyrrhizin low producing strain36.773
DRR006524Root Summer glycyrrhizin low producing strain37.176
DRR006525Leaf Summer glycyrrhizin high producing strain14.844
DRR006526Leaf Summer glycyrrhizin high producing strain14.828

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.234
SRR2868004Drought Stress(Tissue:root)31.200
SRR2967015Control (Tissue:root)34.003

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.791
SRR9715740Leave25.643
SRR9715741Leave27.741
SRR9715739Root2.426
SRR9715742Root16.535
SRR9715743Root12.379

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.887
SRR8749028MeJA induced 9h37.141
SRR8749029MeJA induced 9h40.225
SRR8749030Uninduced36.685
SRR8749031Uninduced39.752
SRR8749032Uninduced37.811

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.567
SRR8400027Control-Root31.308

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved