Gene detail information of Glyur002355s00038473.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40830.3 | 8.00E-13 | RING-H2 finger C1A |
| NR | XP_004488904.1 | 1.29E-23 | PREDICTED: uncharacterized RING finger protein P32A8.03c-like [Cicer arietinum] |
| Swissprot | tr|P0CH30|RING1_GOSHI | 7.00E-13 | E3 ubiquitin-protein ligase RING1 |
| trEMBL | tr|G7K8T3|G7K8T3_MEDTR | 1.00E-19 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES97702.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02355 | 19404 | 20228 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002355s00038473.1 | PF13639.1 | zf-RING_2 | 173 | 215 | 4.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.613 |
| SRR1783600 | control | 3.956 |
| SRR1783602 | moderate drought stress | 2.065 |
| SRR1811619 | moderate drought stress | 2.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.396 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.753 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.858 |
| SRR2967015 | Control (Tissue:root) | 1.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.138 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.003 |
| SRR9715739 | Root | 0.689 |
| SRR9715742 | Root | 1.013 |
| SRR9715743 | Root | 0.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.091 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.548 |
| SRR8400027 | Control-Root | 0.607 |