Gene detail information of Glyur002360s00043668.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49950.3 | 1.00E-75 | telomere repeat binding factor 1 |
| NR | AHB59609.1 | 4.01E-147 | putative MYB-related protein 23 [Arachis hypogaea] |
| Swissprot | tr|Q8VWK4|TRB1_ARATH | 8.00E-105 | Telomere repeat-binding factor 1 |
| trEMBL | tr|V5T6Q3|V5T6Q3_ARAHY | 1.00E-147 | Putative MYB-related protein 23 {ECO:0000313|EMBL:AHB59609.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02360 | 20118 | 24162 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002360s00043668.1 | PF00249.26 | Myb_DNA-binding | 5 | 56 | 8.60E-09 |
| Glyur002360s00043668.1 | PF00538.14 | Linker_histone | 125 | 180 | 6.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.404 |
| SRR1783600 | control | 6.381 |
| SRR1783602 | moderate drought stress | 5.918 |
| SRR1811619 | moderate drought stress | 6.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.010 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.111 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.805 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.364 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.274 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.140 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.282 |
| SRR2967015 | Control (Tissue:root) | 22.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.869 |
| SRR9715740 | Leave | 14.335 |
| SRR9715741 | Leave | 15.691 |
| SRR9715739 | Root | 6.333 |
| SRR9715742 | Root | 9.162 |
| SRR9715743 | Root | 10.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.408 |
| SRR8749028 | MeJA induced 9h | 5.387 |
| SRR8749029 | MeJA induced 9h | 4.906 |
| SRR8749030 | Uninduced | 6.174 |
| SRR8749031 | Uninduced | 4.365 |
| SRR8749032 | Uninduced | 5.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.178 |
| SRR8400027 | Control-Root | 16.763 |