Gene detail information of Glyur002362s00039695.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72220.1 | 2.00E-47 | RING/U-box superfamily protein |
| NR | XP_007141221.1 | 9.02E-127 | hypothetical protein PHAVU_008G177400g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LFY8|ATL54_ARATH | 2.00E-61 | RING-H2 finger protein ATL54 |
| trEMBL | tr|V7B6N5|V7B6N5_PHAVU | 3.00E-127 | Uncharacterized protein {ECO:0000313|EMBL:ESW13215.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02362 | 4311 | 5723 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002362s00039695.1 | PF13639.1 | zf-RING_2 | 142 | 185 | 1.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.161 |
| SRR1783600 | control | 6.721 |
| SRR1783602 | moderate drought stress | 9.219 |
| SRR1811619 | moderate drought stress | 9.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.622 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.774 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.709 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.638 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.709 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.289 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.077 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.478 |
| SRR2967015 | Control (Tissue:root) | 8.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.177 |
| SRR9715740 | Leave | 6.646 |
| SRR9715741 | Leave | 3.755 |
| SRR9715739 | Root | 1.082 |
| SRR9715742 | Root | 3.474 |
| SRR9715743 | Root | 3.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.058 |
| SRR8749028 | MeJA induced 9h | 0.128 |
| SRR8749029 | MeJA induced 9h | 0.013 |
| SRR8749030 | Uninduced | 0.184 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.180 |
| SRR8400027 | Control-Root | 10.078 |