Gene detail information of Glyur002367s00033922.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37930.10serine transhydroxymethyltransferase 1
NRKHN03621.10Serine hydroxymethyltransferase, mitochondrial [Glycine soja]
COGYP_003826403.14.00E-126serine hydroxymethyltransferase [Thermosediminibacter oceani DSM 16646]
Swissprottr|P34899|GLYM_PEA0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|C6ZJZ0|C6ZJZ0_SOYBN0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold023671261719487+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002367s00033922.1PF00464.14SHMT1044961.10E-202


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.326
SRR1783600control0.317
SRR1783602moderate drought stress0.138
SRR1811619moderate drought stress0.149

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.125
DRR006520Root Summer glycyrrhizin high producing strain6.715
DRR006521Root Winter glycyrrhizin high producing strain1.853
DRR006522Root Winter glycyrrhizin high producing strain1.787
DRR006523Root Summer glycyrrhizin low producing strain6.294
DRR006524Root Summer glycyrrhizin low producing strain6.435
DRR006525Leaf Summer glycyrrhizin high producing strain1340.593
DRR006526Leaf Summer glycyrrhizin high producing strain1329.470

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.901
SRR2868004Drought Stress(Tissue:root)14.716
SRR2967015Control (Tissue:root)5.157

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave928.834
SRR9715740Leave1444.627
SRR9715741Leave861.101
SRR9715739Root0.578
SRR9715742Root1.059
SRR9715743Root0.946

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.606
SRR8749028MeJA induced 9h6.351
SRR8749029MeJA induced 9h4.303
SRR8749030Uninduced1.348
SRR8749031Uninduced0.511
SRR8749032Uninduced1.517

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.064
SRR8400027Control-Root2.689

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved