Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur002375s00041473.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33100.1	0	cellulose synthase-like D1
NR	KEH37378.1	0	cellulose synthase-like protein [Medicago truncatula]
COG	YP_001519152.1	6.00E-13	cellulose synthase catalytic subunit [Acaryochloris marina MBIC11017]
Swissprot	tr\|O49323\|CSLD1_ARATH	0	Cellulose synthase-like protein D1
trEMBL	tr\|A0A072V7S9\|A0A072V7S9_MEDTR	0	Cellulose synthase-like protein {ECO:0000313\|EMBL:KEH37378.1}

Sequence

Transcript Sequence

>Glyur002375s00041473.1
ATGATGAACGAGCTCTGCTTCTATGTTCAGCTGGACTACAAGTTCTATTCTCTATGGGCTAAGATGACAAGTGAAGGATTGCAATCTTTGTTTCCTATTGAGGATATCTCTGTAAGAAGTGCAGACCTTGCTGCTCTGCATGACAAGTTTGATCAACCTTCTCCTACAAATCCTACCGGTCGTTCAGACTTGCCGGGCATTGATGTCTTTGTTTCCATTGCTGATCCTGAGAAGGAGCCACCTCTTGTCACTGCCAATACCATTCTTTCCATCCTTGGTGTAGAGTACCCAATTGAAAAGATTTGGGTACCTTTTTGTCGGAAACACAATATTGAACCAAGGAATCCTGACGCTTACTTCAACTTAAAGAATGACCCCACGAAGAACAAGAAACGACCCGATTTTGTAAAAGACCGCAGATGGATGAAGAGAGAATATGATGAATTTAAGGTGAGAATCAATGGACTTCCTGAGGTAATACGTACAAGGACCAAAATGTACAACACTAGGGAAGAGAAGAAGGAAAAGCAGTTACTCAAGGAGAAAAATGGGGGAGTTCTACCCCTAGATCAGACCATTGATGTCCCTAAAGCTACATGGATGGCTGATGGCACTCATTGGCTAGGGACCTGGCTCAACCCCACAGCTGATCATGCTAAAGGTGACTATGCTGGAATCTTGCAGGTCCCAGAGCATGACTCTGTAATGGGTCATGCAGATGAGAAAACTCTAGATTTCGCAGGAGTAGACATCAGGATTCCAATGTTTGCATATGTCTCCAGAGAGAAGCGACCAGGGTATGACCACAACAAGAAAGCAGGAGCCATGAACGCCATGGTTCGAGCCTCGGCTATATTGTCCAATGGCCCCTTCATACTCAATCTAGATTGTGACCACTACTTCTACAACTCCCTTGCTTTGAAGGAGGGAATGTGCATCATGATGGACCATCGTGGCGATCGCGTGTGTTACATACAGTTTCCACAAAGATTTGAAGGGATTGATCCCTCTGATCGATATGCAAATCATAACACAGTCTTCTTTGATGGAGGTATGCACTTGTATGGATTCGAACCACCGAGATTCATTGAGCACACGGGCGTGTTTGGTAGAGTGAAAACCAAGGTGAACCGTAATGCAATGCAGGAGATAACACGTCTTGATGATGAAGACAAGCAGCCCTTGACATCTGATTCAGATATGGGTCTCTCACAAAAGTTTGGAAACTCAACTATGTTCACAGATTCCATAGCTGTAGCTGAGTACAACAAAAGGCCACTTGCTGACCACAAATCTGTCAAGAATGGCAGGCCACCTGGAGCACTGCTCGATCCATGCCCACCATTGGATGCTCCCACTGTTGCTGAGGCCATTGCTGTCATCTCATGTTGGTATGAGGACAAGACAGAATGGGGGGATAGGATAGGCTGGATTTATGGTTCAGTGACAGAGGATGTGGTAACTGGTTACAGGATGCACAACCGTGGTTGGAGATCTATCTATTGCATCACAAAGAGAGATGCTTTCNGCGGCACGGCACCGATAAACCTCACCGACCGCCTACACCAGGTGCTAAGATGGGCAACAGGTTCNGTTGAGATCTTCTTCTCAAGAAACAATGCCTTCTTTGCNAGCAGGNGCCTCAAGTTCCTNCANAGAATTGCATACCTCAATNTTGGCNTCTACCCTTTCACCTCCATCTTCTTAGTAGTGTACTGTTTCATCCCTGCAATGTCCCTTTNCTCAGGACAATTCATAGTACAAGGCCTAGATGTAGCTTTCCTCATCTATCTCTTGCTCATCACTATCTGCCTCACCCTTATCTCCCTCCTTGAAGTAAAGTGGTCAGGCACTGGCCTCGAAGAATGGTGGCGNAACGAGCAGTTTTGGGTCATTGGTGGAACCAGTGCGCACCTTGTTGCCNTTATCCAAGGCTTGTTAAAGGTNGTAGCAGGCATAGAGATCTCATTTACCTTGACTTCNAAGTCAGCAGNAGAGGATGAGGATGACNTCTATGCTGATCTCTACATTGTGAAATGGACTAGTCTCTTCATCATGCCACTCACAATCATCATTGTTAACATTGTTGCACTTATCATTGGGTTCTTGAGNACAGTNTACAGTGTGATCCCTCAGTGGAATAAGCTCATGGGGAGCACTTTCTTTAGCTTCTGGGTGCTGTCTCATATGTACCCTTTTGCTAAAGGGTTAATGGGTAGGAGAGGAAGGGTGCCCACAATTATTTATGTGTGGTCAGGTTTGCTTTCCATTACAATTGCACTGCTTTGGATTTCAATTGATCCTCCAACTGACAATGCTGCAGGAGGAGGAAGGATTGGACGCAGCAACACTGGCAAAGGCAGCCTCGTGACTACCTCGATACGTCTCCACCATCAACGCCAACACTATGAGAAAAATGTTTCCAAGGGAACCAGAGATACTCTCTTGCTAATTGTTCTAAGTCATGTGATTGTCATTCAAGTATCCTGAGTTCATGCTGCAAACAAGCTTGCTAGCAAGCACCAGAGGCTCCTCCTTCAATGTAGAAAAGTGAGCTATGCTGAAAAGTACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02375	3404	11571	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002375s00041473.1	PF03552.9	Cellulose_synt	100	371	9.10E-103
Glyur002375s00041473.1	PF03552.9	Cellulose_synt	378	773	1.00E-182

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.913
SRR1783600	control	2.824
SRR1783602	moderate drought stress	1.584
SRR1811619	moderate drought stress	1.717

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.055
DRR006521	Root Winter glycyrrhizin high producing strain	0.016
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.160
DRR006524	Root Summer glycyrrhizin low producing strain	0.270
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.130
SRR2868004	Drought Stress(Tissue:root)	0.325
SRR2967015	Control (Tissue:root)	0.173

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.472
SRR9715740	Leave	0.390
SRR9715741	Leave	0.142
SRR9715739	Root	0.425
SRR9715742	Root	0.157
SRR9715743	Root	0.070

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.056
SRR8749028	MeJA induced 9h	0.188
SRR8749029	MeJA induced 9h	0.070
SRR8749030	Uninduced	0.098
SRR8749031	Uninduced	0.126
SRR8749032	Uninduced	0.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.366
SRR8400027	Control-Root	0.146