Gene detail information of Glyur002378s00036057.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26900.3 | 1.00E-34 | shikimate kinase like 1 |
| NR | KEH25682.1 | 5.55E-95 | shikimate kinase [Medicago truncatula] |
| COG | YP_001657165.1 | 2.00E-09 | shikimate kinase [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q9LW20|SKL1_ARATH | 4.00E-47 | Probable inactive shikimate kinase like 1, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U7L4|A0A072U7L4_MEDTR | 2.00E-95 | Shikimate kinase {ECO:0000313|EMBL:KEH25682.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02378 | 21899 | 25282 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00891 | E2.7.1.71, aroK, aroL | EC:2.7.1.71 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002378s00036057.1 | PF01202.17 | SKI | 123 | 209 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.419 |
| SRR1783600 | control | 37.288 |
| SRR1783602 | moderate drought stress | 28.277 |
| SRR1811619 | moderate drought stress | 27.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.034 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.063 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.187 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.075 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.481 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.988 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.241 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.011 |
| SRR2967015 | Control (Tissue:root) | 25.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.319 |
| SRR9715740 | Leave | 52.590 |
| SRR9715741 | Leave | 57.975 |
| SRR9715739 | Root | 9.858 |
| SRR9715742 | Root | 11.567 |
| SRR9715743 | Root | 10.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.372 |
| SRR8749028 | MeJA induced 9h | 2.626 |
| SRR8749029 | MeJA induced 9h | 1.748 |
| SRR8749030 | Uninduced | 3.164 |
| SRR8749031 | Uninduced | 0.795 |
| SRR8749032 | Uninduced | 1.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.431 |
| SRR8400027 | Control-Root | 33.806 |