Gene detail information of Glyur002390s00036720.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58700.10phosphatidylinositol-speciwc phospholipase C4
NRAES98642.20phosphatidylinositol-specific phospholipase C [Medicago truncatula]
Swissprottr|Q944C1|PLCD4_ARATH0Phosphoinositide phospholipase C 4
trEMBLtr|G7KE98|G7KE98_MEDTR0Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02390723518829+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05857PLCD EC:3.1.4.11 Inositol phosphate metabolism map00562
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
Thyroid hormone signaling pathwaymap04919
AGE-RAGE signaling pathway in diabetic complicationsmap04933


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0007165  signal transduction

GO:0035556  intracellular signal transduction


molecular_function

GO:0004435  phosphatidylinositol phospholipase C activity

GO:0005515  protein binding

GO:0008081  phosphoric diester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002390s00036720.1PF09279.6EF-hand_like241002.00E-15
Glyur002390s00036720.1PF00388.14PI-PLC-X1072495.10E-49
Glyur002390s00036720.1PF00387.14PI-PLC-Y3464371.90E-27
Glyur002390s00036720.1PF00168.25C24805517.90E-14
Glyur002390s00036720.1PF09279.6EF-hand_like6176953.20E-15
Glyur002390s00036720.1PF00388.14PI-PLC-X7187982.60E-21
Glyur002390s00036720.1PF00387.14PI-PLC-Y8569211.30E-22
Glyur002390s00036720.1PF00168.25C29489991.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.775
SRR1783600control12.831
SRR1783602moderate drought stress7.815
SRR1811619moderate drought stress7.522

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.521
DRR006520Root Summer glycyrrhizin high producing strain17.257
DRR006521Root Winter glycyrrhizin high producing strain5.999
DRR006522Root Winter glycyrrhizin high producing strain5.801
DRR006523Root Summer glycyrrhizin low producing strain22.823
DRR006524Root Summer glycyrrhizin low producing strain22.278
DRR006525Leaf Summer glycyrrhizin high producing strain13.379
DRR006526Leaf Summer glycyrrhizin high producing strain13.429

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.384
SRR2868004Drought Stress(Tissue:root)19.097
SRR2967015Control (Tissue:root)17.459

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave129.527
SRR9715740Leave26.496
SRR9715741Leave100.690
SRR9715739Root10.405
SRR9715742Root49.577
SRR9715743Root40.961

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.508
SRR8749028MeJA induced 9h8.878
SRR8749029MeJA induced 9h8.834
SRR8749030Uninduced15.342
SRR8749031Uninduced0.532
SRR8749032Uninduced1.028

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.218
SRR8400027Control-Root35.640

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved