Gene detail information of Glyur002391s00040854.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22410.10Class-II DAHP synthetase family protein
NRXP_003519173.10PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Glycine max]
COGYP_002297191.103-deoxy-7-phosphoheptulonate synthase [Rhodospirillum centenum SW]
Swissprottr|P27608|AROF_TOBAC0Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBLtr|I1JGU8|I1JGU8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G37080.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold023911818223380+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002391s00040854.1PF01474.11DAHP_synth_2824377.10E-150
Glyur002391s00040854.1PF01474.11DAHP_synth_24384841.50E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control278.750
SRR1783600control282.497
SRR1783602moderate drought stress212.140
SRR1811619moderate drought stress210.512

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain91.019
DRR006520Root Summer glycyrrhizin high producing strain90.447
DRR006521Root Winter glycyrrhizin high producing strain36.636
DRR006522Root Winter glycyrrhizin high producing strain36.176
DRR006523Root Summer glycyrrhizin low producing strain104.856
DRR006524Root Summer glycyrrhizin low producing strain108.210
DRR006525Leaf Summer glycyrrhizin high producing strain164.753
DRR006526Leaf Summer glycyrrhizin high producing strain165.347

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)643.559
SRR2868004Drought Stress(Tissue:root)728.433
SRR2967015Control (Tissue:root)688.961

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave273.511
SRR9715740Leave131.493
SRR9715741Leave286.482
SRR9715739Root343.511
SRR9715742Root579.660
SRR9715743Root525.391

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h385.865
SRR8749028MeJA induced 9h567.513
SRR8749029MeJA induced 9h275.095
SRR8749030Uninduced1577.728
SRR8749031Uninduced1591.284
SRR8749032Uninduced720.690

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root615.564
SRR8400027Control-Root331.867

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved