Gene detail information of Glyur002392s00037543.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G36370.10serine hydroxymethyltransferase 7
NRXP_004485486.10PREDICTED: serine hydroxymethyltransferase 1-like [Cicer arietinum]
COGYP_361350.11.00E-100serine hydroxymethyltransferase [Carboxydothermus hydrogenoformans Z-2901]
Swissprottr|Q9LM59|GLYC6_ARATH0Serine hydroxymethyltransferase 6
trEMBLtr|G7IPE1|G7IPE1_MEDTR0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0239227207999+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002392s00037543.1PF00464.14SHMT1294783.00E-150


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.508
SRR1783600control22.485
SRR1783602moderate drought stress23.326
SRR1811619moderate drought stress22.951

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.933
DRR006520Root Summer glycyrrhizin high producing strain27.501
DRR006521Root Winter glycyrrhizin high producing strain29.801
DRR006522Root Winter glycyrrhizin high producing strain29.031
DRR006523Root Summer glycyrrhizin low producing strain30.472
DRR006524Root Summer glycyrrhizin low producing strain30.817
DRR006525Leaf Summer glycyrrhizin high producing strain26.892
DRR006526Leaf Summer glycyrrhizin high producing strain26.878

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.207
SRR2868004Drought Stress(Tissue:root)36.074
SRR2967015Control (Tissue:root)33.584

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.069
SRR9715740Leave35.619
SRR9715741Leave35.340
SRR9715739Root24.083
SRR9715742Root31.078
SRR9715743Root30.604

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.309
SRR8749028MeJA induced 9h32.756
SRR8749029MeJA induced 9h15.514
SRR8749030Uninduced13.093
SRR8749031Uninduced17.685
SRR8749032Uninduced13.019

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.166
SRR8400027Control-Root33.065

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved