Gene detail information of Glyur002395s00034804.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45420.1 | 6.00E-56 | LOB domain-containing protein 18 |
| NR | XP_004510942.1 | 7.29E-87 | PREDICTED: LOB domain-containing protein 18-like [Cicer arietinum] |
| Swissprot | tr|O22131|LBD18_ARATH | 9.00E-72 | LOB domain-containing protein 18 |
| trEMBL | tr|A0A067HD70|A0A067HD70_CITSI | 1.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:KDO85852.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02395 | 4892 | 8838 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002395s00034804.1 | PF03195.9 | DUF260 | 22 | 122 | 5.90E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.047 |
| SRR1783600 | control | 0.047 |
| SRR1783602 | moderate drought stress | 0.049 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.843 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.044 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.516 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.220 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.837 |
| SRR2967015 | Control (Tissue:root) | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.082 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.194 |
| SRR9715742 | Root | 0.655 |
| SRR9715743 | Root | 1.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 96.235 |
| SRR8749028 | MeJA induced 9h | 62.338 |
| SRR8749029 | MeJA induced 9h | 68.622 |
| SRR8749030 | Uninduced | 11.396 |
| SRR8749031 | Uninduced | 3.923 |
| SRR8749032 | Uninduced | 5.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.199 |
| SRR8400027 | Control-Root | 0.441 |