Gene detail information of Glyur002399s00033218.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10250.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | KEH20836.1 | 0 | phototropic-responsive NPH3 family protein [Medicago truncatula] |
| Swissprot | tr|Q9LFU0|DOT3_ARATH | 0 | BTB/POZ domain-containing protein DOT3 |
| trEMBL | tr|A0A072TUJ7|A0A072TUJ7_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:KEH20836.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02399 | 30765 | 34884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002399s00033218.1 | PF03000.9 | NPH3 | 213 | 464 | 1.30E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.340 |
| SRR1783600 | control | 0.324 |
| SRR1783602 | moderate drought stress | 0.363 |
| SRR1811619 | moderate drought stress | 0.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.314 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.329 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.475 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.427 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.412 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.554 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.863 |
| SRR2967015 | Control (Tissue:root) | 0.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.801 |
| SRR9715740 | Leave | 6.245 |
| SRR9715741 | Leave | 5.885 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.076 |
| SRR9715743 | Root | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.438 |
| SRR8749028 | MeJA induced 9h | 5.960 |
| SRR8749029 | MeJA induced 9h | 4.012 |
| SRR8749030 | Uninduced | 5.954 |
| SRR8749031 | Uninduced | 1.979 |
| SRR8749032 | Uninduced | 3.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.761 |
| SRR8400027 | Control-Root | 0.540 |