Gene detail information of Glyur002403s00038668.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17180.1 | 3.00E-16 | C2H2-like zinc finger protein |
| NR | XP_007134731.1 | 0 | hypothetical protein PHAVU_010G071100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SIJ0|ZAT2_ARATH | 6.00E-22 | Zinc finger protein ZAT2 |
| trEMBL | tr|V7AN80|V7AN80_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW06725.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02403 | 18597 | 20144 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002403s00038668.1 | PF13912.1 | zf-C2H2_6 | 53 | 70 | 11 |
| Glyur002403s00038668.1 | PF13912.1 | zf-C2H2_6 | 213 | 238 | 1.10E-08 |
| Glyur002403s00038668.1 | PF13912.1 | zf-C2H2_6 | 311 | 335 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.094 |
| SRR1783600 | control | 0.094 |
| SRR1783602 | moderate drought stress | 0.145 |
| SRR1811619 | moderate drought stress | 0.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.232 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.344 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.071 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.068 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.120 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.282 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.196 |
| SRR2967015 | Control (Tissue:root) | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.129 |
| SRR9715740 | Leave | 0.068 |
| SRR9715741 | Leave | 0.127 |
| SRR9715739 | Root | 0.096 |
| SRR9715742 | Root | 0.030 |
| SRR9715743 | Root | 0.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.491 |
| SRR8400027 | Control-Root | 0.158 |