Gene detail information of Glyur002413s00035796.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26140.1 | 3.00E-80 | FTSH protease 4 |
| NR | XP_009400539.1 | 6.02E-94 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like isoform X2 [Musa acuminata subsp. malaccensis] |
| COG | YP_004534092.1 | 2.00E-51 | cell division protease FtsH [Novosphingobium sp. PP1Y] |
| Swissprot | tr|Q8LQJ8|FTSH5_ORYSJ | 3.00E-94 | ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (Precursor) |
| trEMBL | tr|M0RX76|M0RX76_MUSAM | 4.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05180_001} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02413 | 38481 | 40955 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08955 | YME1 | EC:3.4.24.- | Mitophagy - yeast | map04139 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002413s00035796.1 | PF00004.24 | AAA | 152 | 181 | 2.20E-06 |
| Glyur002413s00035796.1 | PF00004.24 | AAA | 183 | 252 | 1.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.022 |
| SRR1783600 | control | 0.023 |
| SRR1783602 | moderate drought stress | 0.023 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.134 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.031 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.262 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.146 |
| SRR2967015 | Control (Tissue:root) | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.082 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.126 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.181 |
| SRR8749028 | MeJA induced 9h | 0.068 |
| SRR8749029 | MeJA induced 9h | 0.066 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.190 |
| SRR8400027 | Control-Root | 0.538 |