Gene detail information of Glyur002414s00038660.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37980.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_003516326.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 3.00E-55 | Uncharacterized protein At1g04910 |
| trEMBL | tr|K7K347|K7K347_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G27005.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02414 | 19796 | 25311 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002414s00038660.1 | PF10250.4 | O-FucT | 233 | 358 | 3.10E-26 |
| Glyur002414s00038660.1 | PF10250.4 | O-FucT | 355 | 509 | 2.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.561 |
| SRR1783600 | control | 0.544 |
| SRR1783602 | moderate drought stress | 0.507 |
| SRR1811619 | moderate drought stress | 0.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.184 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.001 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 83.004 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 82.292 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.520 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.587 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.477 |
| SRR2967015 | Control (Tissue:root) | 5.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 40.420 |
| SRR9715740 | Leave | 19.445 |
| SRR9715741 | Leave | 46.729 |
| SRR9715739 | Root | 36.954 |
| SRR9715742 | Root | 130.394 |
| SRR9715743 | Root | 119.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 110.004 |
| SRR8749028 | MeJA induced 9h | 140.925 |
| SRR8749029 | MeJA induced 9h | 140.940 |
| SRR8749030 | Uninduced | 261.792 |
| SRR8749031 | Uninduced | 89.970 |
| SRR8749032 | Uninduced | 99.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.348 |
| SRR8400027 | Control-Root | 18.937 |