Gene detail information of Glyur002418s00033274.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79440.15.00E-180aldehyde dehydrogenase 5F1
NRXP_004488550.10PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial-like [Cicer arietinum]
COGYP_004985500.14.00E-164succinate-semialdehyde dehydrogenase [Azospirillum brasilense Sp245]
Swissprottr|Q9SAK4|SSDH_ARATH0Succinate-semialdehyde dehydrogenase, mitochondrial (Precursor)
trEMBLtr|I1KTW3|I1KTW3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17450.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02418221013682-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17761SSADH EC:1.2.1.24 Butanoate metabolism map00650
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002418s00033274.1PF00171.17Aldedh701733.40E-23
Glyur002418s00033274.1PF00171.17Aldedh1744581.00E-107


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.891
SRR1783600control8.857
SRR1783602moderate drought stress10.915
SRR1811619moderate drought stress10.853

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.033
DRR006520Root Summer glycyrrhizin high producing strain21.497
DRR006521Root Winter glycyrrhizin high producing strain14.758
DRR006522Root Winter glycyrrhizin high producing strain13.818
DRR006523Root Summer glycyrrhizin low producing strain19.231
DRR006524Root Summer glycyrrhizin low producing strain19.928
DRR006525Leaf Summer glycyrrhizin high producing strain12.584
DRR006526Leaf Summer glycyrrhizin high producing strain12.411

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.304
SRR2868004Drought Stress(Tissue:root)27.617
SRR2967015Control (Tissue:root)27.097

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.038
SRR9715740Leave16.511
SRR9715741Leave15.436
SRR9715739Root6.642
SRR9715742Root16.413
SRR9715743Root13.104

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.071
SRR8749028MeJA induced 9h15.664
SRR8749029MeJA induced 9h14.393
SRR8749030Uninduced4.450
SRR8749031Uninduced1.177
SRR8749032Uninduced3.120

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.840
SRR8400027Control-Root31.075

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved