Gene detail information of Glyur002420s00036891.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77590.10long chain acyl-CoA synthetase 9
NRXP_004502465.10PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cicer arietinum]
COGYP_005846047.11.00E-69Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
Swissprottr|Q9CAP8|LACS9_ARATH0Long chain acyl-CoA synthetase 9, chloroplastic
trEMBLtr|Q2PEY2|Q2PEY2_TRIPR0Putative long chain acyl-CoA synthetase 9 {ECO:0000313|EMBL:BAE71220.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold024201104021376-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002420s00036891.1PF00501.23AMP-binding1535657.50E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.372
SRR1783600control5.471
SRR1783602moderate drought stress6.800
SRR1811619moderate drought stress6.708

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.331
DRR006520Root Summer glycyrrhizin high producing strain5.326
DRR006521Root Winter glycyrrhizin high producing strain6.109
DRR006522Root Winter glycyrrhizin high producing strain5.968
DRR006523Root Summer glycyrrhizin low producing strain4.014
DRR006524Root Summer glycyrrhizin low producing strain4.117
DRR006525Leaf Summer glycyrrhizin high producing strain2.009
DRR006526Leaf Summer glycyrrhizin high producing strain1.942

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.780
SRR2868004Drought Stress(Tissue:root)19.343
SRR2967015Control (Tissue:root)18.840

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.870
SRR9715740Leave1.915
SRR9715741Leave3.013
SRR9715739Root2.640
SRR9715742Root7.697
SRR9715743Root6.099

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.408
SRR8749028MeJA induced 9h2.685
SRR8749029MeJA induced 9h1.999
SRR8749030Uninduced0.481
SRR8749031Uninduced0.334
SRR8749032Uninduced0.322

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.565
SRR8400027Control-Root18.461

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved